RNA id: TU405195


Basic Information

Item Value
RNA id TU405195
length 766
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G357064
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19502 ~ 69804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagatctagctgatctgtcatattataatacagacagtagatctagctggtctgtcatgttataaaagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctttaatAGTATAATCGAGACAGTGgatatagcttgtctgtcatattataactgagacagtagacctagctggtctgtcataatataatagagacagtagatctagctggtctttcaaattataatagagacagtagatctagctggtctgttatgctataaaagagacagtagatctagctggtctgtcatattataatagagacagaatacctagctggtctgtcataatataatagagaccgtagatatagctggtctgtcatattataatagagacagtagatctagctggtctgtcatcttaaaaaagagacagtaaatctagctggtctgtcataatataatagagacagtagatctagctggtctgtaataatataatagagacagtagatctagctggtctgtcataatataatagatacagcagatctagctggtctgttataatataatagagacagtagatctagctggtctgtgataatataatagagacagtagatctagctggtctgttataatataatagagacagtagatcaagctggtctgttataatataatagagacagtagatctagctggtaagtCATATTATAAAacagacagaagatctagctggtctgtcataatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405208 lncRNA upstream 1473 19502 ~ 21220 (+) False G357064
TU405212 lncRNA downstream 7245 45939 ~ 47594 (+) True G357065
TU405220 lncRNA downstream 9146 47840 ~ 50995 (+) True G357071
TU405228 lncRNA downstream 26228 64922 ~ 145934 (+) False G357078
TU405262 lncRNA downstream 74666 113360 ~ 118405 (+) True G357109
TU405267 lncRNA downstream 103481 142175 ~ 143689 (+) True G357114
XM_036976551.1 mRNA downstream 50354 89048 ~ 186339 (+) True palm2akap2
XM_036976548.1 mRNA downstream 186315 225009 ~ 285133 (+) False LOC110523064
XM_036976549.1 mRNA downstream 195830 234524 ~ 285133 (+) False LOC110523064
XM_036976550.1 mRNA downstream 221416 260110 ~ 285133 (+) False LOC110523064
XM_036976552.1 mRNA downstream 257932 296626 ~ 312598 (+) True LOC110524922
TU405294 other downstream 162023 200717 ~ 201642 (+) True G357136
TU405615 other downstream 372595 411289 ~ 416443 (+) False LOC110523070
TU405616 other downstream 372595 411289 ~ 416443 (+) False LOC110523070
TU405617 other downstream 372595 411289 ~ 416529 (+) False LOC110523070
TU405618 other downstream 372595 411289 ~ 416443 (+) True LOC110523070

Expression Profile