RNA id: TU405220


Basic Information

Item Value
RNA id TU405220
length 202
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G357071
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 47840 ~ 50995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaacacatagacaggaacaatcacccacaaacacacagtgaaccccaggctacctaaatatggttcccaatcagagacaatgatgaacacctgcctctgactgagaaccatatcaggctgaacatagaaatagacgaacaagacatgaaacatagaatgcccactcagatcacaccctgaccaatcaaaacatagaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405212 lncRNA upstream 246 45939 ~ 47594 (+) True G357065
TU405191 lncRNA upstream 4013 36241 ~ 43827 (+) True G357064
TU405173 lncRNA upstream 7661 36241 ~ 40179 (+) False G357064
TU405204 lncRNA upstream 8830 35671 ~ 39010 (+) False G357064
TU405195 lncRNA upstream 9146 22693 ~ 38694 (+) False G357064
TU405228 lncRNA downstream 13927 64922 ~ 145934 (+) False G357078
TU405262 lncRNA downstream 62365 113360 ~ 118405 (+) True G357109
TU405267 lncRNA downstream 91180 142175 ~ 143689 (+) True G357114
TU405230 lncRNA downstream 92844 143839 ~ 145934 (+) True G357078
TU405274 lncRNA downstream 98165 149160 ~ 152502 (+) True G357118
XM_036976551.1 mRNA downstream 38053 89048 ~ 186339 (+) True palm2akap2
XM_036976548.1 mRNA downstream 174014 225009 ~ 285133 (+) False LOC110523064
XM_036976549.1 mRNA downstream 183529 234524 ~ 285133 (+) False LOC110523064
XM_036976550.1 mRNA downstream 209115 260110 ~ 285133 (+) False LOC110523064
XM_036976552.1 mRNA downstream 245631 296626 ~ 312598 (+) True LOC110524922
TU405294 other downstream 149722 200717 ~ 201642 (+) True G357136
TU405615 other downstream 360294 411289 ~ 416443 (+) False LOC110523070
TU405616 other downstream 360294 411289 ~ 416443 (+) False LOC110523070
TU405617 other downstream 360294 411289 ~ 416529 (+) False LOC110523070
TU405618 other downstream 360294 411289 ~ 416443 (+) True LOC110523070

Expression Profile