RNA id: TU405228



Basic Information


Item Value
RNA id TU405228
length 625
lncRNA type sense_over
GC content 0.39
exon number 3
gene id G357078
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64922 ~ 145934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttatccaggtattctagttgagaacacctttatttaaccaggtaggctagtggagaacacctttatttaaccaggtaggctagtggagaacacctttatttaaccaggtaggctagtggagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggctagttgagaacatctttatttaaccaggtaggcaagttgagaacaagttctcatttacaattgcgacctggccaagataaagcaaagcagttcgacagatacaacgacacagagttacacatggagtaaaacaaacatacagtcaataatacagtataaacaagtctatatac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU405220 lncRNA upstream 13927 47840 ~ 50995 (+) True G357071
TU405212 lncRNA upstream 17328 45939 ~ 47594 (+) True G357065
TU405191 lncRNA upstream 21095 36241 ~ 43827 (+) True G357064
TU405173 lncRNA upstream 24743 36241 ~ 40179 (+) False G357064
TU405204 lncRNA upstream 25912 35671 ~ 39010 (+) False G357064
TU405274 lncRNA downstream 3226 149160 ~ 152502 (+) True G357118
TU405276 lncRNA downstream 8808 154742 ~ 155312 (+) True G357120
TU405283 lncRNA downstream 26130 172064 ~ 172279 (+) True G357126
TU405286 lncRNA downstream 31012 176946 ~ 177162 (+) True G357129
TU405287 lncRNA downstream 32729 178663 ~ 178920 (+) True G357130
XM_036976548.1 mRNA downstream 79075 225009 ~ 285133 (+) False LOC110523064
XM_036976549.1 mRNA downstream 88590 234524 ~ 285133 (+) False LOC110523064
XM_036976550.1 mRNA downstream 114176 260110 ~ 285133 (+) False LOC110523064
XM_036976552.1 mRNA downstream 150692 296626 ~ 312598 (+) True LOC110524922
XR_005051596.1 mRNA downstream 264827 410761 ~ 416534 (+) False LOC110523070
TU405294 other downstream 54783 200717 ~ 201642 (+) True G357136
TU405615 other downstream 265355 411289 ~ 416443 (+) False LOC110523070
TU405616 other downstream 265355 411289 ~ 416443 (+) False LOC110523070
TU405617 other downstream 265355 411289 ~ 416529 (+) False LOC110523070
TU405618 other downstream 265355 411289 ~ 416443 (+) True LOC110523070

Expression Profile