RNA id: TU405262



Basic Information


Item Value
RNA id TU405262
length 422
lncRNA type intronic
GC content 0.47
exon number 3
gene id G357109
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 113360 ~ 118405 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caactgactaggtatccccctttccctttccaactgactaggtatccccctttccaactgactaggtatccccctttccaacggACTATGTATCACGCTTttcctttacaactgactaggtatccccctttccaactgactaggtatccccctttccctttccaactgactaggtatccccctttaatTCTGATtatgtatccccctttacaactgactaggcatcccaatttccctttacaactgactaggtatccccctttccctttccaactgactaggtatccccctttccaactgactaggtatccccctttccctttccaactgactaggtatccccctttccatttccaactgactaggtatccccctttccctttccaactgactaggtatccccctttccaactgactagata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU405188 lncRNA upstream 43556 19502 ~ 69804 (+) False G357064
TU405267 lncRNA downstream 23770 142175 ~ 143689 (+) True G357114
TU405230 lncRNA downstream 25434 143839 ~ 145934 (+) True G357078
TU405274 lncRNA downstream 30755 149160 ~ 152502 (+) True G357118
TU405276 lncRNA downstream 36337 154742 ~ 155312 (+) True G357120
TU405283 lncRNA downstream 53659 172064 ~ 172279 (+) True G357126
XM_036976548.1 mRNA downstream 106604 225009 ~ 285133 (+) False LOC110523064
XM_036976549.1 mRNA downstream 116119 234524 ~ 285133 (+) False LOC110523064
XM_036976550.1 mRNA downstream 141705 260110 ~ 285133 (+) False LOC110523064
XM_036976552.1 mRNA downstream 178221 296626 ~ 312598 (+) True LOC110524922
XR_005051596.1 mRNA downstream 292356 410761 ~ 416534 (+) False LOC110523070
TU405294 other downstream 82312 200717 ~ 201642 (+) True G357136
TU405615 other downstream 292884 411289 ~ 416443 (+) False LOC110523070
TU405616 other downstream 292884 411289 ~ 416443 (+) False LOC110523070
TU405617 other downstream 292884 411289 ~ 416529 (+) False LOC110523070
TU405618 other downstream 292884 411289 ~ 416443 (+) True LOC110523070

Expression Profile