RNA id: TU405276


Basic Information

Item Value
RNA id TU405276
length 310
lncRNA type intronic
GC content 0.42
exon number 2
gene id G357120
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 154742 ~ 155312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtctctgtctctgtttctgtctctgtttctgtctctgtctctatcagtgtttctgtctcctctgtctctgtctttgtgtctttctctgtttctttctctgtttctttctctgtttctgtctctgtttctgtctgtctctgtttctgtctctatcagtgtttctgtctcctctgtctttgtctctgtctctatcagtgtttctgtctcctctgtctctgtctttgtgtctgtctctgtctctatcagtgtttctgtctcctctgtctctgtgtctgtctctgtctatatttCTGTTATTGTCACTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405274 lncRNA upstream 2240 149160 ~ 152502 (+) True G357118
TU405228 lncRNA upstream 8808 64922 ~ 145934 (+) False G357078
TU405230 lncRNA upstream 8808 143839 ~ 145934 (+) True G357078
TU405267 lncRNA upstream 11053 142175 ~ 143689 (+) True G357114
TU405262 lncRNA upstream 36337 113360 ~ 118405 (+) True G357109
TU405283 lncRNA downstream 16752 172064 ~ 172279 (+) True G357126
TU405286 lncRNA downstream 21634 176946 ~ 177162 (+) True G357129
TU405287 lncRNA downstream 23351 178663 ~ 178920 (+) True G357130
TU405288 lncRNA downstream 23737 179049 ~ 179352 (+) True G357131
TU405293 lncRNA downstream 43012 198324 ~ 198613 (+) True G357135
XM_036976548.1 mRNA downstream 69697 225009 ~ 285133 (+) False LOC110523064
XM_036976549.1 mRNA downstream 79212 234524 ~ 285133 (+) False LOC110523064
XM_036976550.1 mRNA downstream 104798 260110 ~ 285133 (+) False LOC110523064
XM_036976552.1 mRNA downstream 141314 296626 ~ 312598 (+) True LOC110524922
XR_005051596.1 mRNA downstream 255449 410761 ~ 416534 (+) False LOC110523070
TU405294 other downstream 45405 200717 ~ 201642 (+) True G357136
TU405615 other downstream 255977 411289 ~ 416443 (+) False LOC110523070
TU405616 other downstream 255977 411289 ~ 416443 (+) False LOC110523070
TU405617 other downstream 255977 411289 ~ 416529 (+) False LOC110523070
TU405618 other downstream 255977 411289 ~ 416443 (+) True LOC110523070

Expression Profile