RNA id: TU405298


Basic Information

Item Value
RNA id TU405298
length 2565
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G357137
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 206569 ~ 209343 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacagagtcaatgtggaggctatatacaggggataccggttacagagtcaatgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacagggggtaccggtagagtcaatgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacagggtgttacggtacagagtcaatgcggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacagggggtagcggtacagagtcagtgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcagtgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtgcaggggtacaggttagtcgaggtaatatgtacatgtaggtagggttgaAGTGACTATGGAcaggtaatatgtgcatgtaggtaggggtgaagtgactatggacaggtaatatgtgcatgtaggtaggggtgaagtgactatggacaggtaatatgtgcatgtaggtaggggtgaagtgactatggacaggtaatatgtgcatgtaggtaggggtgaagtgactatggacaggtaatatgtgcatgtaggtaggggtgaagtgactatggacaggtaatatgtgcatgtaggtaggggtgaagtgactatggacaggtaatatgtacatgtaggtaggggtgaagtgactatggacaggtaatatgtgcatgtaggtaggggtgaagtgactatggacaggtaatatgtgcatgtaggtagggttGAAGTGACTATGGACAGgtaatagataataaacagtgagtagcagcagtgtaaaaacaaatggagggggggtcaatgtaaataatccggtggccattttattaattgttcagcagtcttattcaGGCCCCAAGATGCACTACAGCAGAGAGTAGACAGGGCATTGGGGGGGGGGCACCTCTTATTCAGGCCCCAAGATGCACTACAGCATAGAGTAGCCAGGGCATTGGGGGGAGGGCACCTGTTATTCAGGCCCCGAGATGCACCACAGCAGAGAGTAGCCAGGGCATTGGGGGGGGGGACACCTCTTATTCAGGCCCCAAGATGCACCACAGCAGAGAGTAGCCAgggcattgggggggggggggtggcacctCTTATTCAGGCCCAAGATGCACTACAGCAGAGAGTAGACAgggcattggggggggggggacacacacctCTTATTCAGGCCCCGAGATGCACCACAGCAGAGAGTAGACAGGGGTATTCTAGTCAAAGCCAACACGTTCTAATAACAACAAACCTGGATAATTTTTTTCCTAGAGTGTGTTGAAGTTTCTACGTATATAAAACAATGATTtataattatttttgtttttatgcAACGTGTGATTACTTCAGGATGACAGCACGTGTCTGGTTTCAAAAGGCCTTAGTAGTTCAACTCAGAGACGATGGAATAATAACACAATACTAAGGAAGTGAATTCAGGGGGCAGCCGCCCCCCCCCCACCGGATTCCAACTCTGGTCCAACAACTGCCAACCCAATGCCTTCTCCGTTACACCAAGAGATCTGAACCGCCTGCTGAAGTTGCTAGGTGTTGGCTTAAGGTCGCTACAATATCCCTTCATTCTAAGCCAAGCACAATCCGCCACACCTGTTCTCTCGTCTTACAGAGGCCACCACTGTACTCACCAATCGACAAACCTCCATGATCGAATTAATTCAGACCACTAGCTATAAACAAGGAATGTTTTTCACATCTTCGGGAAGTGAGCATTTGTTAGTGAAGATGTTTTTGtgtgaaaaaaaatctagaaatatCACTGAAATATCGTCTGCAAATATGGGCCTGTGTCCCAAAAtgtctccctattccctacatagtgaagcAGTTTTGACCGGACACtggtaaaaaagtagtgcactatatagggaatgtggTGCCATGTAGAAGAACCCTCTGTGTTTTGAGTTGACGATAATAACCGTGAGTTTGTGTGTGAGGACGTACCGGGCCTTGACCGAATGCCGTTGAGCAGAcaaagtgcatcccaaatggcccccttcccaaatggccccctattccaacagagcactactttagacccatCGGTGTGACGCTGAGGGCCCTGGAATCAGGTCAAACAGAGAGCATTGTGGACAGAATAAGGTGCCAGGTTTCAGAACTAACCAAACAACAAAGTAATACTTCACTTTGGAAAGCTGAggtgccattttttttttttttacagttattTATGCTTACGATAttttctctctgtcaattcaaacTGTTCCTCCTTCATGCCCTTCAGTCCAGTCAATCTATCGGTGGTCTGGCCTGCTGAAGCAGTGATTTTtattctccccatctccctctgtaCGGTATGATAAGCAGTCCAATAAACAGCAGTTGTTCAGTGTGCCT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405300 lncRNA upstream 3267 202595 ~ 203302 (+) True G357138
TU405293 lncRNA upstream 7956 198324 ~ 198613 (+) True G357135
TU405288 lncRNA upstream 27217 179049 ~ 179352 (+) True G357131
TU405287 lncRNA upstream 27649 178663 ~ 178920 (+) True G357130
TU405286 lncRNA upstream 29407 176946 ~ 177162 (+) True G357129
TU405302 lncRNA downstream 539 209882 ~ 216811 (+) True G357139
TU405304 lncRNA downstream 7856 217199 ~ 217477 (+) True G357140
TU405307 lncRNA downstream 10422 219765 ~ 220018 (+) True G357143
TU405310 lncRNA downstream 14979 224322 ~ 224532 (+) True G357146
TU405311 lncRNA downstream 15468 224811 ~ 225056 (+) True LOC110523064
XM_036976551.1 mRNA upstream 20230 89048 ~ 186339 (+) True palm2akap2
XM_036976548.1 mRNA downstream 15666 225009 ~ 285133 (+) False LOC110523064
XM_036976549.1 mRNA downstream 25181 234524 ~ 285133 (+) False LOC110523064
XM_036976550.1 mRNA downstream 50767 260110 ~ 285133 (+) False LOC110523064
XM_036976552.1 mRNA downstream 87283 296626 ~ 312598 (+) True LOC110524922
XR_005051596.1 mRNA downstream 201418 410761 ~ 416534 (+) False LOC110523070
TU405294 other upstream 4927 200717 ~ 201642 (+) True G357136
TU405615 other downstream 201946 411289 ~ 416443 (+) False LOC110523070
TU405616 other downstream 201946 411289 ~ 416443 (+) False LOC110523070
TU405617 other downstream 201946 411289 ~ 416529 (+) False LOC110523070
TU405618 other downstream 201946 411289 ~ 416443 (+) True LOC110523070
TU405905 other downstream 729725 939068 ~ 939873 (+) True G357564

Expression Profile