RNA id: TU405310


Basic Information

Item Value
RNA id TU405310
length 211
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G357146
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 224322 ~ 224532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTGGTCCCGGTCTGCCCCTGCAACAAGGGGTGACGGCTGGCCAATTCAATTAGGTGGCTCATGTAGCATGAACAAAGAAGAGACAAACACACGCTACCCTATTGAGATAAAGCCAGAGATAATCACTGGTAGAACCCTGGAGGGACAGATTAGAGTAAACATTCTCTACTACAGCAGTGCCTCCTGTTTGTGGTCATCAATTTTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405307 lncRNA upstream 4304 219765 ~ 220018 (+) True G357143
TU405304 lncRNA upstream 6845 217199 ~ 217477 (+) True G357140
TU405302 lncRNA upstream 7511 209882 ~ 216811 (+) True G357139
TU405298 lncRNA upstream 14979 206569 ~ 209343 (+) True G357137
TU405300 lncRNA upstream 21020 202595 ~ 203302 (+) True G357138
TU405311 lncRNA downstream 279 224811 ~ 225056 (+) True LOC110523064
TU405315 lncRNA downstream 3501 228033 ~ 228234 (+) True G357150
TU405317 lncRNA downstream 5093 229625 ~ 229846 (+) True G357152
TU405339 lncRNA downstream 26525 251057 ~ 251604 (+) False G357167
TU405340 lncRNA downstream 26681 251213 ~ 251604 (+) True G357167
XM_036976551.1 mRNA upstream 37983 89048 ~ 186339 (+) True palm2akap2
XM_036976548.1 mRNA downstream 477 225009 ~ 285133 (+) False LOC110523064
XM_036976549.1 mRNA downstream 9992 234524 ~ 285133 (+) False LOC110523064
XM_036976550.1 mRNA downstream 35578 260110 ~ 285133 (+) False LOC110523064
XM_036976552.1 mRNA downstream 72094 296626 ~ 312598 (+) True LOC110524922
XR_005051596.1 mRNA downstream 186229 410761 ~ 416534 (+) False LOC110523070
TU405294 other upstream 22680 200717 ~ 201642 (+) True G357136
TU405615 other downstream 186757 411289 ~ 416443 (+) False LOC110523070
TU405616 other downstream 186757 411289 ~ 416443 (+) False LOC110523070
TU405617 other downstream 186757 411289 ~ 416529 (+) False LOC110523070
TU405618 other downstream 186757 411289 ~ 416443 (+) True LOC110523070
TU405905 other downstream 714536 939068 ~ 939873 (+) True G357564

Expression Profile