RNA id: TU405315


Basic Information

Item Value
RNA id TU405315
length 202
lncRNA type intronic
GC content 0.48
exon number 1
gene id G357150
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 228033 ~ 228234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgaggtcaatatccttccgggatacccgggccaggttgattagaaaagtctgctcgcagaagtgttttatcTGAGATcctgatcgctgagatcctggttgaagacagcagaggtgtatttggagggcaggttggtcaggattatatctatgagggtgcccatgtttatggatttagggttgtacctggtaggttccttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405311 lncRNA upstream 2977 224811 ~ 225056 (+) True LOC110523064
TU405310 lncRNA upstream 3501 224322 ~ 224532 (+) True G357146
TU405307 lncRNA upstream 8015 219765 ~ 220018 (+) True G357143
TU405304 lncRNA upstream 10556 217199 ~ 217477 (+) True G357140
TU405302 lncRNA upstream 11222 209882 ~ 216811 (+) True G357139
TU405317 lncRNA downstream 1391 229625 ~ 229846 (+) True G357152
TU405339 lncRNA downstream 22823 251057 ~ 251604 (+) False G357167
TU405340 lncRNA downstream 22979 251213 ~ 251604 (+) True G357167
TU405345 lncRNA downstream 34571 262805 ~ 263020 (+) True G357172
TU405354 lncRNA downstream 65126 293360 ~ 293614 (+) True G357180
XM_036976551.1 mRNA upstream 41694 89048 ~ 186339 (+) True palm2akap2
XM_036976549.1 mRNA downstream 6290 234524 ~ 285133 (+) False LOC110523064
XM_036976550.1 mRNA downstream 31876 260110 ~ 285133 (+) False LOC110523064
XM_036976552.1 mRNA downstream 68392 296626 ~ 312598 (+) True LOC110524922
XR_005051596.1 mRNA downstream 182527 410761 ~ 416534 (+) False LOC110523070
XM_036976554.1 mRNA downstream 182568 410802 ~ 416534 (+) False LOC110523070
TU405294 other upstream 26391 200717 ~ 201642 (+) True G357136
TU405615 other downstream 183055 411289 ~ 416443 (+) False LOC110523070
TU405616 other downstream 183055 411289 ~ 416443 (+) False LOC110523070
TU405617 other downstream 183055 411289 ~ 416529 (+) False LOC110523070
TU405618 other downstream 183055 411289 ~ 416443 (+) True LOC110523070
TU405905 other downstream 710834 939068 ~ 939873 (+) True G357564

Expression Profile