RNA id: TU405317


Basic Information

Item Value
RNA id TU405317
length 222
lncRNA type intronic
GC content 0.39
exon number 1
gene id G357152
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 229625 ~ 229846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagcggaccaagtaattgggcgtcactctaaagcgggaaggtggaataaacgagtcaggagtaggttttcttgattgaacacagttctctattgagggcatttggtcaacacaaacattccaacataatcaatgaaaatcttccaaggaaaaacatacatcttcttctccagatgaaacaggaacacaataggcttatctttaaactacaacaaaaagtcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405315 lncRNA upstream 1391 228033 ~ 228234 (+) True G357150
TU405311 lncRNA upstream 4569 224811 ~ 225056 (+) True LOC110523064
TU405310 lncRNA upstream 5093 224322 ~ 224532 (+) True G357146
TU405307 lncRNA upstream 9607 219765 ~ 220018 (+) True G357143
TU405304 lncRNA upstream 12148 217199 ~ 217477 (+) True G357140
TU405339 lncRNA downstream 21211 251057 ~ 251604 (+) False G357167
TU405340 lncRNA downstream 21367 251213 ~ 251604 (+) True G357167
TU405345 lncRNA downstream 32959 262805 ~ 263020 (+) True G357172
TU405354 lncRNA downstream 63514 293360 ~ 293614 (+) True G357180
TU405355 lncRNA downstream 64153 293999 ~ 294234 (+) True G357181
XM_036976551.1 mRNA upstream 43286 89048 ~ 186339 (+) True palm2akap2
XM_036976549.1 mRNA downstream 4678 234524 ~ 285133 (+) False LOC110523064
XM_036976550.1 mRNA downstream 30264 260110 ~ 285133 (+) False LOC110523064
XM_036976552.1 mRNA downstream 66780 296626 ~ 312598 (+) True LOC110524922
XR_005051596.1 mRNA downstream 180915 410761 ~ 416534 (+) False LOC110523070
XM_036976554.1 mRNA downstream 180956 410802 ~ 416534 (+) False LOC110523070
TU405294 other upstream 27983 200717 ~ 201642 (+) True G357136
TU405615 other downstream 181443 411289 ~ 416443 (+) False LOC110523070
TU405616 other downstream 181443 411289 ~ 416443 (+) False LOC110523070
TU405617 other downstream 181443 411289 ~ 416529 (+) False LOC110523070
TU405618 other downstream 181443 411289 ~ 416443 (+) True LOC110523070
TU405905 other downstream 709222 939068 ~ 939873 (+) True G357564

Expression Profile