RNA id: TU405345


Basic Information

Item Value
RNA id TU405345
length 216
lncRNA type intronic
GC content 0.48
exon number 1
gene id G357172
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 262805 ~ 263020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagatgggacgtgggtatatgctcctgtaaaccaatgaggagatgggacgtgggtatatgctcctgtaaaccaatgaggagatgggagaggccggACTTGCAGCGAGTtgagcatcacaaatagaaccaagttctattttagctccTGGCCACGCAGATGCTTGTTGACAAGCGAGCAGTATTGATGAGATGATTGAATAACAatgtacagtggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405339 lncRNA upstream 11201 251057 ~ 251604 (+) False G357167
TU405340 lncRNA upstream 11201 251213 ~ 251604 (+) True G357167
TU405317 lncRNA upstream 32959 229625 ~ 229846 (+) True G357152
TU405315 lncRNA upstream 34571 228033 ~ 228234 (+) True G357150
TU405311 lncRNA upstream 37749 224811 ~ 225056 (+) True LOC110523064
TU405354 lncRNA downstream 30340 293360 ~ 293614 (+) True G357180
TU405355 lncRNA downstream 30979 293999 ~ 294234 (+) True G357181
TU405565 lncRNA downstream 76641 339661 ~ 340520 (+) True G357325
TU405577 lncRNA downstream 80261 343281 ~ 345524 (+) True G357330
TU405603 lncRNA downstream 130294 393314 ~ 397499 (+) False G357352
XM_036976551.1 mRNA upstream 76466 89048 ~ 186339 (+) True palm2akap2
XM_036976552.1 mRNA downstream 33606 296626 ~ 312598 (+) True LOC110524922
XR_005051596.1 mRNA downstream 147741 410761 ~ 416534 (+) False LOC110523070
XM_036976554.1 mRNA downstream 147782 410802 ~ 416534 (+) False LOC110523070
XM_036976555.1 mRNA downstream 148092 411112 ~ 416534 (+) False LOC110523070
XM_036976556.1 mRNA downstream 148092 411112 ~ 416534 (+) False LOC110523070
TU405294 other upstream 61163 200717 ~ 201642 (+) True G357136
TU405615 other downstream 148269 411289 ~ 416443 (+) False LOC110523070
TU405616 other downstream 148269 411289 ~ 416443 (+) False LOC110523070
TU405617 other downstream 148269 411289 ~ 416529 (+) False LOC110523070
TU405618 other downstream 148269 411289 ~ 416443 (+) True LOC110523070
TU405905 other downstream 676048 939068 ~ 939873 (+) True G357564

Expression Profile