RNA id: TU405751


Basic Information

Item Value
RNA id TU405751
length 405
lncRNA type intronic
GC content 0.44
exon number 2
gene id G357455
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 680259 ~ 681503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACTAGATACCAAGCCACTAGGGAAAGTAAGAGCTGGTACTACTAGATACCAAGCCACTAGGTAAAGTAAGAGCTGGTACTACTAGATACCAAGCCACTAGGGAAAGTAAGAGCGGGTACTACTAGATACCAAGCCACTAGGGAAAGTAAGAGCTGGTACTACTAGATACCAAGCCACTAGGTAAAGTAAGAGCTGGTACTACTAGATACCAAGCCACTAGGGAAAGTAAGAGCGGGTACTACTAGATACCAAGCCACTAGGTAAAGTAAGAGCTGGTACTACTAGATACCAAGCCACTAGGTAAAGTAAGAGCTGGTACTACTAGATACCAAGCCACTAGGTAAAGTAAGAGCTGGTACTACTAGATACCAAGCCACTAGGTAAAGTAAGAGCTGGTACTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405733 lncRNA upstream 20467 659030 ~ 659792 (+) True G357440
TU405715 lncRNA upstream 33438 646494 ~ 646821 (+) True G357426
TU405698 lncRNA upstream 51027 628592 ~ 629232 (+) True G357419
TU405682 lncRNA upstream 103596 575635 ~ 576663 (+) True G357403
TU405679 lncRNA upstream 114312 548938 ~ 565947 (+) True G357401
TU405757 lncRNA downstream 8054 689557 ~ 698914 (+) True G357459
TU405761 lncRNA downstream 17855 699358 ~ 699559 (+) True G357463
TU405762 lncRNA downstream 23150 704653 ~ 707576 (+) True G357464
TU405763 lncRNA downstream 23182 704685 ~ 709239 (+) True G357465
TU405793 lncRNA downstream 35194 716697 ~ 716908 (+) True G357476
XM_036976565.1 mRNA upstream 80980 482981 ~ 599279 (+) False LOC110524924
XR_005051598.1 mRNA downstream 51508 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA downstream 51508 733011 ~ 735791 (+) False LOC110523098
XR_005051612.1 mRNA downstream 540160 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 540160 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 540160 1221663 ~ 1297401 (+) False LOC110523075
TU405617 other upstream 263730 411289 ~ 416529 (+) False LOC110523070
TU405615 other upstream 263816 411289 ~ 416443 (+) False LOC110523070
TU405616 other upstream 263816 411289 ~ 416443 (+) False LOC110523070
TU405618 other upstream 263816 411289 ~ 416443 (+) True LOC110523070
TU405294 other upstream 478617 200717 ~ 201642 (+) True G357136
TU405905 other downstream 257565 939068 ~ 939873 (+) True G357564
TU405906 other downstream 258732 940235 ~ 940741 (+) True G357565
TU406542 other downstream 706892 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 793292 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 1218860 1900363 ~ 1904878 (+) True LOC110523096

Expression Profile