RNA id: TU405842


Basic Information

Item Value
RNA id TU405842
length 2276
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G357514
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 819465 ~ 821862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTATTCAACCCTGCATCATCAGGAATAATAACGTGTACTTGCAGTTCTGTTCCGACAAGGTATTGAACTCTGACCCCACGAGGTCAAAGGTATTGTTCAGTAGCACACTGAAGAAACTGAGGGTTCAAACCAAAAGAAGCCTCTAGGAGAGAGGAAGTGTTTCTAAGCCAATCACTCACACTGCCatacataaaaaacaaaaatataggaGACAATATACAGCTGGTAAGTAATCAACAGAGTTTCTCATCATGCCAAATACACATCTTCACACTTCAGAGAGACACAGAATGATCTAAAACTCAGCATTCTAACTAAAACAAGGGAGAAAAGCACTGGTCTATTCCCTGATGAAACATCTAGCATTCCTGATACAGAATGAGAATCCTATGGGTGTTCGATCCCCTAAGAGATCTGGAACATGGTTCAGAGGGTTCCCCTAACCCCTAATGCTGCAGCTGGGTTATGGTTGTGCACCACGGGGCCAGATCTTCATTCCTTTATGGGTCTGTAGCTGCTTGGTTAAACTGTGAGGAGGGAAGGCGAGGCTGGTTTGGTTTCTTCTAGCGCCAGACagagaaaaaggctcagtgtttCTCATGCGTTGGGGCGGCTCTGGGTTGACTGACAGATCAAGAACAGGAAGGGATTGTACTTGCACAGGAAGCAGGAAGTCAGAACAGGAGCGAGTTCAGTTAATCATTGGTTGCGTCTGAATTGGCacactattccttatatagtgcctATTGAGCAGGGGTATTGAACTCTGACCCCACGAGGTCAGGGGTATTGAAACTCTGACCCCACGAGGTCAAGGGTATTGAAACTCTGACCCCACGAGGTCAGGGGTATTGAAACTCTGACCCCACGAGGTCAGGGGTATTGAAACTCTGACCccacgaggtccggagcctgctgggtTTCTGTTTTACCTGATCAttattgcacccacctggtgtcccaggtctaaatcaggccctgattagaggggaatcacccacctgatgtcccaggtctaaatcaggccctgattagaggggaatcacccacctggtgtcccaggtctaaaccaggccctgattagaggggaatcacccacctggtgtcccaggtctaaaccaggccctgattagaggggaatcacccacctggtgtcccaggtctaaaccaggccctgattagaggggaatcacccacctggtgtcccaggtctaaaccagtccctgattagaggggaatcacccacctggtgtcccaggtctaaaccaggccctgattagaggggaatcacccacctggtgtcccaggtctaaaccaggccctgattagaggggaatcacccacctggtgtcccaggtctaaaccaggccctgattagaggggaatcacccacctggtgtcccaggtctaaaccaggccctgattagaggggaatccctcacctggtgtcccaggtctaaatcagtccctgattagaggggaatcacccacctggtgtcccaggtctaaaccaggccctgattagaggggaatcacccacctggtgtcccaggtctaaaccaggccctgattagaggggaatcacccacctggtgtcccaggtctaaaccagtccctgattagaggggaatccctcacctggtgtcccaggtctaaatcagtccctgattagaggggaatcacccacctggtgtcccaggtctaaaccaggccctgattagaggggaatcacccacctggtgtcccaggtctaaaccaggccctgattagaggggaatcacccacctggtgtcccaggtctaaaccagtccctgattagaggggaacaatgaaaaaaaacacagTGGAAATGGCCTGGAGCCCCAGAGTTGAGTTAGAGGGTTCTAGGGAACAGGTGTTCCAGATGCATCCAGTCAGTCTGGGCTACTGGGCCATGCTGTTGAGGCTGCTGTTGGATCCTCCCAGGCCGTTCTCGTTCTTCTCTAAACTCTTGACTGCACTAGGGACCTGCATCCCTGTACTGAGGCTCAGTCCACCACACCAAACCTGGAACACATCACATTAATACAAAACTTCTATCATGGTCAACAACATTATACCTGTAGATAACAGGTTACCGTGGACCACAAtcctacagagagatggagaggtatggaGATGGGGGCGGGGTTTATGACACCTCACACCTATTGTAAAACTAAGGCAGCAGACAAAATTCCTTTGTCACTATGGAGAACCGGCCTCAGAACATGAACATGCAATAAAATGGACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405829 lncRNA upstream 13427 805239 ~ 806038 (+) True G357502
TU405824 lncRNA upstream 14243 804431 ~ 805222 (+) False G357501
TU405827 lncRNA upstream 14243 804431 ~ 805222 (+) True G357501
TU405820 lncRNA upstream 23869 794229 ~ 795596 (+) True G357498
TU405803 lncRNA upstream 50681 762778 ~ 768784 (+) True G357486
TU405854 lncRNA downstream 10450 832312 ~ 833699 (+) True G357520
TU405867 lncRNA downstream 33170 855032 ~ 855451 (+) True G357531
TU405879 lncRNA downstream 58963 880825 ~ 887021 (+) True G357541
TU405884 lncRNA downstream 72369 894231 ~ 958257 (+) True G357546
TU405893 lncRNA downstream 88702 910564 ~ 1006885 (+) True G357554
XR_005051598.1 mRNA upstream 83674 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA upstream 83674 733011 ~ 735791 (+) False LOC110523098
XM_036976563.1 mRNA upstream 220186 482995 ~ 599279 (+) False LOC110524924
XR_005051612.1 mRNA downstream 399801 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 399801 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 399801 1221663 ~ 1297401 (+) False LOC110523075
XR_005051613.1 mRNA downstream 399801 1221663 ~ 1297401 (+) False LOC110523075
XM_036976584.1 mRNA downstream 399801 1221663 ~ 1297402 (+) False LOC110523075
TU405617 other upstream 402936 411289 ~ 416529 (+) False LOC110523070
TU405615 other upstream 403022 411289 ~ 416443 (+) False LOC110523070
TU405616 other upstream 403022 411289 ~ 416443 (+) False LOC110523070
TU405618 other upstream 403022 411289 ~ 416443 (+) True LOC110523070
TU405294 other upstream 617823 200717 ~ 201642 (+) True G357136
TU405905 other downstream 117206 939068 ~ 939873 (+) True G357564
TU405906 other downstream 118373 940235 ~ 940741 (+) True G357565
TU406542 other downstream 566533 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 652933 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 1078501 1900363 ~ 1904878 (+) True LOC110523096

Expression Profile