RNA id: TU405884


Basic Information

Item Value
RNA id TU405884
length 354
lncRNA type read_through
GC content 0.42
exon number 2
gene id G357546
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 894231 ~ 958257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggaccttcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctcagactattacagtgcaggtgcatttatacggagacttgattacacacaggtgcatttatacggcgacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405879 lncRNA upstream 7210 880825 ~ 887021 (+) True G357541
TU405835 lncRNA upstream 30350 812609 ~ 863881 (+) True G357508
TU405867 lncRNA upstream 38780 855032 ~ 855451 (+) True G357531
TU405854 lncRNA upstream 60532 832312 ~ 833699 (+) True G357520
TU405842 lncRNA upstream 72369 819465 ~ 821862 (+) True G357514
TU405909 lncRNA downstream 10363 968620 ~ 970497 (+) True G357568
TU405910 lncRNA downstream 12369 970626 ~ 971152 (+) True G357569
TU405913 lncRNA downstream 15020 973277 ~ 978486 (+) False G357571
TU405912 lncRNA downstream 19317 977574 ~ 978486 (+) True G357571
TU405927 lncRNA downstream 48907 1007164 ~ 1007472 (+) True G357584
XR_005051598.1 mRNA upstream 158440 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA upstream 158440 733011 ~ 735791 (+) False LOC110523098
XM_036976563.1 mRNA upstream 294952 482995 ~ 599279 (+) False LOC110524924
XR_005051612.1 mRNA downstream 263406 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 263406 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 263406 1221663 ~ 1297401 (+) False LOC110523075
XR_005051613.1 mRNA downstream 263406 1221663 ~ 1297401 (+) False LOC110523075
XM_036976584.1 mRNA downstream 263406 1221663 ~ 1297402 (+) False LOC110523075
TU405617 other upstream 477702 411289 ~ 416529 (+) False LOC110523070
TU405615 other upstream 477788 411289 ~ 416443 (+) False LOC110523070
TU405616 other upstream 477788 411289 ~ 416443 (+) False LOC110523070
TU405618 other upstream 477788 411289 ~ 416443 (+) True LOC110523070
TU405294 other upstream 692589 200717 ~ 201642 (+) True G357136
TU406542 other downstream 430138 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 516538 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 942106 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 1088417 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 1658621 2616878 ~ 2617330 (+) True G359084

Expression Profile