RNA id: TU405893


Basic Information

Item Value
RNA id TU405893
length 570
lncRNA type read_through
GC content 0.31
exon number 4
gene id G357554
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 910564 ~ 1006885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CtgtttttttatattattttttattaacaaaCAAATATCAACAAACAAAATAGGAATAGTCACACGCAAACCAGATTACATacaaactatttacattgccaGGAATCCTAAACAAACAAATCTCAATAATAAAACACCTTTTTATTAAAGTGGTGCCATATTGTTTAAATTCATTTATAAAGTGAAAAAAGTTAGGTTTTGAATCAGTTGAATTAGACCATTtgcatttgtgaatatgaaatgTACCTAATATTATtaaatcaagtcaaattgtatttgtcacatgcgccgaatacaacaggtaaagtgaaatgctttacaccttacagtgaaatgccttacagtgaaatgccttacagtgaaatgccttacaccttacagtgaaatgccttacaccttacagtgaaatgccttacagtgaaatgccttacaccttacagtgaaatgccttacaccttacagtgaaatgcttacttacaggctctaaccaacagtgcaaaaatgtgttaggtgaacaataggtaagtaaagagataaaaaacattaaaaataacagtagcgaggttatat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405879 lncRNA upstream 23543 880825 ~ 887021 (+) True G357541
TU405835 lncRNA upstream 46683 812609 ~ 863881 (+) True G357508
TU405927 lncRNA downstream 279 1007164 ~ 1007472 (+) True G357584
TU405930 lncRNA downstream 2455 1009340 ~ 1009768 (+) True G357587
TU405907 lncRNA downstream 5889 1012774 ~ 1013971 (+) True G357566
TU405948 lncRNA downstream 34933 1041818 ~ 1043034 (+) False G357595
TU405954 lncRNA downstream 35585 1042470 ~ 1177985 (+) False G357595
XR_005051598.1 mRNA upstream 174773 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA upstream 174773 733011 ~ 735791 (+) False LOC110523098
XM_036976563.1 mRNA upstream 311285 482995 ~ 599279 (+) False LOC110524924
XR_005051612.1 mRNA downstream 214778 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 214778 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 214778 1221663 ~ 1297401 (+) False LOC110523075
XR_005051613.1 mRNA downstream 214778 1221663 ~ 1297401 (+) False LOC110523075
XM_036976584.1 mRNA downstream 214778 1221663 ~ 1297402 (+) False LOC110523075
TU405617 other upstream 494035 411289 ~ 416529 (+) False LOC110523070
TU405615 other upstream 494121 411289 ~ 416443 (+) False LOC110523070
TU405616 other upstream 494121 411289 ~ 416443 (+) False LOC110523070
TU405618 other upstream 494121 411289 ~ 416443 (+) True LOC110523070
TU405294 other upstream 708922 200717 ~ 201642 (+) True G357136
TU406542 other downstream 381510 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 467910 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 893478 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 1039789 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 1609993 2616878 ~ 2617330 (+) True G359084

Expression Profile