RNA id: TU405910


Basic Information

Item Value
RNA id TU405910
length 303
lncRNA type intronic
GC content 0.41
exon number 2
gene id G357569
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 970626 ~ 971152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacagagataaaaagtgagagagagagagagagagagacaaacacacttCTCAACACGTATTTTCTACATGGGCATGTAGATCTGTTCTCGACGTAGCCGTTTTATCAAGGTGAAAAGGCGCAATGTAATTCATGATATCCAATCTCAAATACACACGGCTGAATGCTGTTTTAATCCAATCAGCATCCTGTATCCAAACTACCCGGGTTTATAAAATGCATGAATGTGTCCATGACGTGGTATTGTCGAGCAGAAGCAGAAGGAATCAGAAACTAAATGTCTTTCTACCTACAGTCCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405909 lncRNA upstream 129 968620 ~ 970497 (+) True G357568
TU405884 lncRNA upstream 12369 894231 ~ 958257 (+) True G357546
TU405879 lncRNA upstream 83605 880825 ~ 887021 (+) True G357541
TU405867 lncRNA upstream 115175 855032 ~ 855451 (+) True G357531
TU405854 lncRNA upstream 136927 832312 ~ 833699 (+) True G357520
TU405913 lncRNA downstream 2125 973277 ~ 978486 (+) False G357571
TU405912 lncRNA downstream 6422 977574 ~ 978486 (+) True G357571
TU405927 lncRNA downstream 36012 1007164 ~ 1007472 (+) True G357584
TU405930 lncRNA downstream 38188 1009340 ~ 1009768 (+) True G357587
TU405907 lncRNA downstream 41622 1012774 ~ 1013971 (+) True G357566
XR_005051598.1 mRNA upstream 234835 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA upstream 234835 733011 ~ 735791 (+) False LOC110523098
XM_036976563.1 mRNA upstream 371347 482995 ~ 599279 (+) False LOC110524924
XR_005051612.1 mRNA downstream 250511 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 250511 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 250511 1221663 ~ 1297401 (+) False LOC110523075
XR_005051613.1 mRNA downstream 250511 1221663 ~ 1297401 (+) False LOC110523075
XM_036976584.1 mRNA downstream 250511 1221663 ~ 1297402 (+) False LOC110523075
TU405906 other upstream 29885 940235 ~ 940741 (+) True G357565
TU405905 other upstream 30753 939068 ~ 939873 (+) True G357564
TU405617 other upstream 554097 411289 ~ 416529 (+) False LOC110523070
TU405616 other upstream 554183 411289 ~ 416443 (+) False LOC110523070
TU406542 other downstream 417243 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 503643 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 929211 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 1075522 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 1645726 2616878 ~ 2617330 (+) True G359084

Expression Profile