RNA id: TU405912


Basic Information

Item Value
RNA id TU405912
length 601
lncRNA type intronic
GC content 0.40
exon number 3
gene id G357571
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 973277 ~ 978486 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataagacactgctcagagtaggttttaggatgatgttaagacactgctcagagtaggttttaggatgatgataagacactgctcagagtaggttttaggatgatgataagacactgctcagagtaggttttaggatgataagacactgctcagagtaggttttaggatgataagacactgctcagagtaggttttaggatgatgataagacactgctcagagtaggttttaggatgatgataagacactgctcagagtaggttttagggtgatgataagacactgctcagagtaggttttaggatgttaagacactgctcagagtaggttttaggatgttaagacactgctcagagtaggttttaggatcttaagacactgctcagagtaggttttaggatgatgataagacactgctcagagtaggttttaggatcttaagacactgctcagagtaggttttaggatgatgataagacactgctcagagtaggttttaggatcttaagacactgctcagagtaggttttaggatgatgataagacactgctcagagtaggttttaggatcttaagacactgctcagagtaggttttagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405910 lncRNA upstream 6422 970626 ~ 971152 (+) True G357569
TU405909 lncRNA upstream 7077 968620 ~ 970497 (+) True G357568
TU405884 lncRNA upstream 19317 894231 ~ 958257 (+) True G357546
TU405879 lncRNA upstream 90553 880825 ~ 887021 (+) True G357541
TU405867 lncRNA upstream 122123 855032 ~ 855451 (+) True G357531
TU405927 lncRNA downstream 28678 1007164 ~ 1007472 (+) True G357584
TU405930 lncRNA downstream 30854 1009340 ~ 1009768 (+) True G357587
TU405907 lncRNA downstream 34288 1012774 ~ 1013971 (+) True G357566
TU405948 lncRNA downstream 63332 1041818 ~ 1043034 (+) False G357595
TU405954 lncRNA downstream 63984 1042470 ~ 1177985 (+) False G357595
XR_005051598.1 mRNA upstream 241783 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA upstream 241783 733011 ~ 735791 (+) False LOC110523098
XM_036976563.1 mRNA upstream 378295 482995 ~ 599279 (+) False LOC110524924
XR_005051612.1 mRNA downstream 243177 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 243177 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 243177 1221663 ~ 1297401 (+) False LOC110523075
XR_005051613.1 mRNA downstream 243177 1221663 ~ 1297401 (+) False LOC110523075
XM_036976584.1 mRNA downstream 243177 1221663 ~ 1297402 (+) False LOC110523075
TU405906 other upstream 36833 940235 ~ 940741 (+) True G357565
TU405905 other upstream 37701 939068 ~ 939873 (+) True G357564
TU405617 other upstream 561045 411289 ~ 416529 (+) False LOC110523070
TU405616 other upstream 561131 411289 ~ 416443 (+) False LOC110523070
TU406542 other downstream 409909 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 496309 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 921877 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 1068188 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 1638392 2616878 ~ 2617330 (+) True G359084

Expression Profile