RNA id: TU405930


Basic Information

Item Value
RNA id TU405930
length 429
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G357587
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1009340 ~ 1009768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccTAAAATatcatacccaaatctaactgcctgtagctcaggccccgaagcaaggatatgcatattcttggtaccatttgaaaggaaacactttgaagtttgtggaaatgtgaattgattgtaggataatataacacaatagatctggtagaagaaaatacaaataaaataaaaaaacttatttttctaccaccatctttgaaatgcatggTCCCagttccagccatcactctgattgtaattccgatggtgtccacaagatggcagtgtatgtgcaaagtttacTTGACAGacggataacttgaagtatgagcgaACCAGCTTTttcagtattagtagccatattataagttcaacatttgcaaaacaaccagttttcataacttcataactctgaatattcatagaatttttgtccaaaaggaaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405927 lncRNA upstream 1868 1007164 ~ 1007472 (+) True G357584
TU405893 lncRNA upstream 2455 910564 ~ 1006885 (+) True G357554
TU405913 lncRNA upstream 30854 973277 ~ 978486 (+) False G357571
TU405912 lncRNA upstream 30854 977574 ~ 978486 (+) True G357571
TU405910 lncRNA upstream 38188 970626 ~ 971152 (+) True G357569
TU405907 lncRNA downstream 3006 1012774 ~ 1013971 (+) True G357566
TU405948 lncRNA downstream 32050 1041818 ~ 1043034 (+) False G357595
TU405954 lncRNA downstream 32702 1042470 ~ 1177985 (+) False G357595
TU405947 lncRNA downstream 33591 1043359 ~ 1046664 (+) True G357595
TU405994 lncRNA downstream 144415 1154183 ~ 1154749 (+) True G357625
XR_005051598.1 mRNA upstream 273549 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA upstream 273549 733011 ~ 735791 (+) False LOC110523098
XM_036976563.1 mRNA upstream 410061 482995 ~ 599279 (+) False LOC110524924
XR_005051612.1 mRNA downstream 211895 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 211895 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 211895 1221663 ~ 1297401 (+) False LOC110523075
XR_005051613.1 mRNA downstream 211895 1221663 ~ 1297401 (+) False LOC110523075
XM_036976584.1 mRNA downstream 211895 1221663 ~ 1297402 (+) False LOC110523075
TU405906 other upstream 68599 940235 ~ 940741 (+) True G357565
TU405905 other upstream 69467 939068 ~ 939873 (+) True G357564
TU405617 other upstream 592811 411289 ~ 416529 (+) False LOC110523070
TU405616 other upstream 592897 411289 ~ 416443 (+) False LOC110523070
TU406542 other downstream 378627 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 465027 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 890595 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 1036906 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 1607110 2616878 ~ 2617330 (+) True G359084

Expression Profile