RNA id: TU405995


Basic Information

Item Value
RNA id TU405995
length 338
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G357626
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1155196 ~ 1155574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccccaagtccagaacagactatgggaggcgcacagtactacatagagacatggctacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagacatggctacatgtaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagacatggctacatgtaactctattccacagtactacatagagccatgactacatggaactctattccacagtactacatagagccat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405994 lncRNA upstream 447 1154183 ~ 1154749 (+) True G357625
TU405947 lncRNA upstream 108532 1043359 ~ 1046664 (+) True G357595
TU405948 lncRNA upstream 112162 1041818 ~ 1043034 (+) False G357595
TU405907 lncRNA upstream 141225 1012774 ~ 1013971 (+) True G357566
TU405930 lncRNA upstream 145428 1009340 ~ 1009768 (+) True G357587
TU405997 lncRNA downstream 2911 1158485 ~ 1161157 (+) True G357628
TU405999 lncRNA downstream 7362 1162936 ~ 1163771 (+) True G357630
TU406002 lncRNA downstream 10780 1166354 ~ 1166683 (+) True G357633
TU406456 lncRNA downstream 27180 1182754 ~ 1183323 (+) True G357973
TU406467 lncRNA downstream 56841 1212415 ~ 1212672 (+) True G357984
XR_005051598.1 mRNA upstream 419405 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA upstream 419405 733011 ~ 735791 (+) False LOC110523098
XM_036976563.1 mRNA upstream 555917 482995 ~ 599279 (+) False LOC110524924
XR_005051612.1 mRNA downstream 66089 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 66089 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 66089 1221663 ~ 1297401 (+) False LOC110523075
XR_005051613.1 mRNA downstream 66089 1221663 ~ 1297401 (+) False LOC110523075
XM_036976584.1 mRNA downstream 66089 1221663 ~ 1297402 (+) False LOC110523075
TU405906 other upstream 214455 940235 ~ 940741 (+) True G357565
TU405905 other upstream 215323 939068 ~ 939873 (+) True G357564
TU405617 other upstream 738667 411289 ~ 416529 (+) False LOC110523070
TU405616 other upstream 738753 411289 ~ 416443 (+) False LOC110523070
TU406542 other downstream 232821 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 319221 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 744789 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 891100 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 1461304 2616878 ~ 2617330 (+) True G359084

Expression Profile