RNA id: TU405999


Basic Information

Item Value
RNA id TU405999
length 212
lncRNA type inter_gene
GC content 0.62
exon number 2
gene id G357630
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1162936 ~ 1163771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgactggctggctgactggctgactgactggctgactggctggctgactggctgactggctgactggctgactggctggctgactgactggctgactggctggctgactgactggctgactggctgactggctgactgactggctggctgactgactgactgactggctgactggctggctgactggctgactggctgactggctgactgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405997 lncRNA upstream 1779 1158485 ~ 1161157 (+) True G357628
TU405995 lncRNA upstream 7362 1155196 ~ 1155574 (+) True G357626
TU405994 lncRNA upstream 8187 1154183 ~ 1154749 (+) True G357625
TU405947 lncRNA upstream 116272 1043359 ~ 1046664 (+) True G357595
TU405948 lncRNA upstream 119902 1041818 ~ 1043034 (+) False G357595
TU406002 lncRNA downstream 2583 1166354 ~ 1166683 (+) True G357633
TU406456 lncRNA downstream 18983 1182754 ~ 1183323 (+) True G357973
TU406467 lncRNA downstream 48644 1212415 ~ 1212672 (+) True G357984
TU406469 lncRNA downstream 50250 1214021 ~ 1214494 (+) True G357986
TU406490 lncRNA downstream 70917 1234688 ~ 1235117 (+) True G357999
XR_005051598.1 mRNA upstream 427145 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA upstream 427145 733011 ~ 735791 (+) False LOC110523098
XM_036976563.1 mRNA upstream 563657 482995 ~ 599279 (+) False LOC110524924
XR_005051612.1 mRNA downstream 57892 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 57892 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 57892 1221663 ~ 1297401 (+) False LOC110523075
XR_005051613.1 mRNA downstream 57892 1221663 ~ 1297401 (+) False LOC110523075
XM_036976584.1 mRNA downstream 57892 1221663 ~ 1297402 (+) False LOC110523075
TU405906 other upstream 222195 940235 ~ 940741 (+) True G357565
TU405905 other upstream 223063 939068 ~ 939873 (+) True G357564
TU405617 other upstream 746407 411289 ~ 416529 (+) False LOC110523070
TU405616 other upstream 746493 411289 ~ 416443 (+) False LOC110523070
TU406542 other downstream 224624 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 311024 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 736592 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 882903 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 1453107 2616878 ~ 2617330 (+) True G359084

Expression Profile