RNA id: TU406456


Basic Information

Item Value
RNA id TU406456
length 570
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G357973
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1182754 ~ 1183323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagaagcccaagcctctgctaaatgacctactgtatattataacagcagggaagaagcccaagcctctgctaaatgacctactgtatattataacagtagggaagaagcccaagcctctgctaaatgacctactgtatattataacagcagggaagaagcccaagcctctgctaaatgacctactgtatattataacagcagggaagaagcctctgctaaatgacctactgtatattataacagcagggaagaagcctctgctaaatgacctactgtatattataacagcagggaagaagcctctgctaaatgacctactgtatattataacagcagggaagaagcccaaccctctgctaaatgacctactgtatattataacagcagggaagaagcccaagcctctgctaaatgacctactgtatattataacagcagggaagaagcctctgctaaatgacctactgtatattataacagcagggaagaagcccaagcctctgctaaatgacctactgtatattataacagcagggaagaagcctctgctaaatgacctactgtatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405954 lncRNA upstream 4769 1042470 ~ 1177985 (+) False G357595
TU406002 lncRNA upstream 16071 1166354 ~ 1166683 (+) True G357633
TU405999 lncRNA upstream 18983 1162936 ~ 1163771 (+) True G357630
TU405997 lncRNA upstream 21597 1158485 ~ 1161157 (+) True G357628
TU405995 lncRNA upstream 27180 1155196 ~ 1155574 (+) True G357626
TU406467 lncRNA downstream 29092 1212415 ~ 1212672 (+) True G357984
TU406469 lncRNA downstream 30698 1214021 ~ 1214494 (+) True G357986
TU406490 lncRNA downstream 51365 1234688 ~ 1235117 (+) True G357999
TU406494 lncRNA downstream 81051 1264374 ~ 1264818 (+) True G358003
TU406485 lncRNA downstream 93647 1276970 ~ 1277414 (+) True G357995
XR_005051598.1 mRNA upstream 446963 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA upstream 446963 733011 ~ 735791 (+) False LOC110523098
XM_036976563.1 mRNA upstream 583475 482995 ~ 599279 (+) False LOC110524924
XR_005051612.1 mRNA downstream 38340 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 38340 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 38340 1221663 ~ 1297401 (+) False LOC110523075
XR_005051613.1 mRNA downstream 38340 1221663 ~ 1297401 (+) False LOC110523075
XM_036976584.1 mRNA downstream 38340 1221663 ~ 1297402 (+) False LOC110523075
TU405906 other upstream 242013 940235 ~ 940741 (+) True G357565
TU405905 other upstream 242881 939068 ~ 939873 (+) True G357564
TU405617 other upstream 766225 411289 ~ 416529 (+) False LOC110523070
TU405616 other upstream 766311 411289 ~ 416443 (+) False LOC110523070
TU406542 other downstream 205072 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 291472 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 717040 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 863351 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 1433555 2616878 ~ 2617330 (+) True G359084

Expression Profile