RNA id: TU406469


Basic Information

Item Value
RNA id TU406469
length 474
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G357986
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1214021 ~ 1214494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATAACACACAAcgataaacatatatattttatggGCAGTTACTTTACATTGCCGGCAGGACTCTGGTCGCCTATAAGTAACATATCCAGGGAACGGGAGATCCGACATTTTGATGTGCGACCTGTCAAAAGAGAAAACAAAACTGAATTATCAGATACATTTTTTCGCCTCTTCAGAAAATGTTCAGCCATCTTGTATTATTCACCACACGAGGAAGTTGGAACTTAAAATCCTTAGATTGCTAACTCTAAATATGATATTGTTGATATGTTGGCTAATTGACTAAAATCACTCAAATTTTTTAAGTCCAATGTCCTCCAAGTTTCCTTCGATTCCAGCAACTACGCCTAAAGCTACTTAAAGTAGGCCTATTCACTACAAAATTGGATCTCTCTCCTCCGAGGCGCATCAAAACCATACTAAAGCTCCGGTTGTAAACTGGTGCCATGAACTCAacattaagaggtgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406467 lncRNA upstream 1349 1212415 ~ 1212672 (+) True G357984
TU406456 lncRNA upstream 30698 1182754 ~ 1183323 (+) True G357973
TU406002 lncRNA upstream 47338 1166354 ~ 1166683 (+) True G357633
TU405999 lncRNA upstream 50250 1162936 ~ 1163771 (+) True G357630
TU405997 lncRNA upstream 52864 1158485 ~ 1161157 (+) True G357628
TU406490 lncRNA downstream 20194 1234688 ~ 1235117 (+) True G357999
TU406494 lncRNA downstream 49880 1264374 ~ 1264818 (+) True G358003
TU406485 lncRNA downstream 62476 1276970 ~ 1277414 (+) True G357995
TU406483 lncRNA downstream 82424 1296918 ~ 1298618 (+) False LOC110523075
TU406484 lncRNA downstream 82424 1296918 ~ 1298618 (+) True LOC110523075
XR_005051598.1 mRNA upstream 478230 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA upstream 478230 733011 ~ 735791 (+) False LOC110523098
XM_036976563.1 mRNA upstream 614742 482995 ~ 599279 (+) False LOC110524924
XR_005051612.1 mRNA downstream 7169 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 7169 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 7169 1221663 ~ 1297401 (+) False LOC110523075
XR_005051613.1 mRNA downstream 7169 1221663 ~ 1297401 (+) False LOC110523075
XM_036976584.1 mRNA downstream 7169 1221663 ~ 1297402 (+) False LOC110523075
TU405906 other upstream 273280 940235 ~ 940741 (+) True G357565
TU405905 other upstream 274148 939068 ~ 939873 (+) True G357564
TU405617 other upstream 797492 411289 ~ 416529 (+) False LOC110523070
TU405616 other upstream 797578 411289 ~ 416443 (+) False LOC110523070
TU406542 other downstream 173901 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 260301 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 685869 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 832180 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 1402384 2616878 ~ 2617330 (+) True G359084

Expression Profile