RNA id: TU406648


Basic Information

Item Value
RNA id TU406648
length 2578
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G358124
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1299517 ~ 1302598 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGTTTTATACAAGCTTTATTACAACTTGGTTAACAGCTGTACATGTCAGAGCGTAGGAAGCACATTTTATCAACAAGTTTCAAATGGACAGGTAACTATGACCACTCATTTCCTCCTCCACTGTTTGTTAGTCCCATACAGTGTGTACATATTATACAAGCAGCAATATAAAACACTGGCAAATGGAAAGGTTATTTGCTACTTTATTTTTTGATGTAAAATAAGTCTTTCCTATGAATAAAAAATACAGCAACCATAAAACCTGGCGATTAAGTTCTGACTGAAAAGCCTCagttctataaaaaaaaaaaagttttattttcTCCTAGAGGTTTTTTTAGCCTAGGAAAAGCAGATTGAACGCTACGCTCACCATTGTTTGAAACATTCAGTCTGGTGTAACTATGCTAGAGGTTTATTGTCCTGTGTAgaacactagcctggtcccagatcactTGTCAAGACAGCAcacactgatctgggaccaggctaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggctaggagactaactgatctgggaccaggccaggAGACTAatcgatctgggaccaggccaggACACTAatcgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggctaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggagactaaccgatctgggaccaggccaggAGACTAACCGATCTGGGACCAGTTGTAACTTTAGTAAAACTATACTTATAGCCTGAGGTTATAATGCATTTTgatgcagttataatgcattGTAAGCCTTGTCATAAGCAAGTAGGACCCTACCTTATCATCTCATAACAGCCTGGATGAAATACGAGCCATTGGGAGTCAGTTGACATGGAGAGACATAATATATTATCCGACTTATAAAACATTATAAAGGCTCATAGGTGCTTATAACAAGTTCTAAAGACTCATATCTACTGAGTAAAGTGTTTCCATATTATTATTTCTTCCAGCGCTACTCGGTTCTGATTAATGGCAAGTGGTTTTGAAACTATTATTGTGTCCCaataggcaccctattccctatatagtgcactacttttgacccctaatccctacatagtgcacttttgaccagggctcatagggggatagggtgccattggggatacagacagtgGCTCTATGGTTAATCAAGGagacatgcaaaaaaaaaacacacaaaaaaacaggaCAGACAGTTAGGAGACACGTTGCTCTACCAATCATATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGTTGCTCTACCAATCATATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGTTGCTCTACCAATCATAATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGTTGCTCTACCAATCATAATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGTTGCTCTACCAATCATAATCACCACATGTCAGGAGACTAGTATTTAACACAAGTAGAGACACGATGCCCTACCAATCATAATCATGTCTGGACACTAGTATTTAACACAAGTAGTAAAAGCCATACAAAGTTACATAATAATATGGACACATCTTTTTGTTATGAGCTGAAAAACACACAGTATCAGCAACAAGTCAACAAGTCAATAAGTCAACAAGTCTACTCTTCCTCACACCGGTTGGTTTTTACACTCGAGGCGAAAGCACTTTCAACATGTTCAGGATATAACATGATAGGAAAGATCCTCTTTGACTTCCTACCCGTCTGTCCATTGGTGCCACTTCTGAGGTCGTGTTCATTAGTGGCGCAGCGGGTCTAGAGGCATCACTatagacccgggttcgatcccgggacccgcccagcgtcgtccgggctaggggagggtttgaacggggtaggccgtcattgtaaataagaatttgttcttgcttagttaaataaaggttaaataaaaaattaaaacgtTTGTTTGTTATTGTACTAACATGAGTGTTTTATACTGGACAGGTGGAGGTAGAAcatccctgtttcagtccgttttctaacgtttggtgcctaatgaacatgacccggGACAGGGCAGTCTTACTATGTGGGCCATCTGCTAATGAACTACGACCCGGGACAGGGCAGTCTTACTACGTGGGCCATCTGCTAATGAACCACGACCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406657 lncRNA downstream 11283 1287013 ~ 1288234 (-) True G358127
TU406642 lncRNA downstream 13910 1284924 ~ 1285607 (-) True G358123
TU406621 lncRNA downstream 43638 1253880 ~ 1255879 (-) True G358106
TU406618 lncRNA downstream 48952 1246588 ~ 1250565 (-) True G358103
TU406612 lncRNA downstream 64326 1234685 ~ 1235191 (-) True G358099
TU406659 lncRNA upstream 2424 1305022 ~ 1308006 (-) True G358129
TU406663 lncRNA upstream 12238 1314836 ~ 1315053 (-) True G358133
TU406667 lncRNA upstream 19854 1322452 ~ 1322766 (-) True G358137
TU406668 lncRNA upstream 23232 1325830 ~ 1326245 (-) True G358138
TU406669 lncRNA upstream 24000 1326598 ~ 1326964 (-) True G358139
XM_036976591.1 mRNA downstream 77823 1214832 ~ 1221694 (-) True LOC110523084
XM_036976589.1 mRNA downstream 78019 1214832 ~ 1221498 (-) False LOC110523084
XM_036976590.1 mRNA downstream 78141 1214832 ~ 1221376 (-) False LOC110523084
XM_036976529.1 mRNA downstream 171899 1090907 ~ 1127618 (-) True LOC118964538
XR_005051607.1 mRNA downstream 248439 1045266 ~ 1051078 (-) True LOC110523115
XM_036976592.1 mRNA upstream 33069 1335667 ~ 1475700 (-) False LOC110517810
XR_005051621.1 mRNA upstream 33069 1335667 ~ 1475700 (-) False LOC110517810
XR_005051622.1 mRNA upstream 33069 1335667 ~ 1475700 (-) True LOC110517810
XM_021601501.2 mRNA upstream 606351 1908949 ~ 1910347 (-) True LOC110523086
XM_036976530.1 mRNA upstream 706536 2009134 ~ 2060858 (-) True LOC118964539
TU406655 other downstream 866 1295528 ~ 1298651 (-) True G358126
TU406216 other downstream 480770 817154 ~ 818747 (-) False G357797
TU406214 other downstream 480818 817154 ~ 818699 (-) False G357797
TU407041 other upstream 542226 1844824 ~ 1893316 (-) False G358446
TU408601 other upstream 1771947 3074545 ~ 3075362 (-) False G359712
TU408602 other upstream 1771947 3074545 ~ 3075005 (-) False G359712
TU408603 other upstream 1771947 3074545 ~ 3080338 (-) True G359712
TU408665 other upstream 1889915 3192513 ~ 3193105 (-) True G359752

Expression Profile