RNA id: TU406509


Basic Information

Item Value
RNA id TU406509
length 221
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G358014
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1309609 ~ 1309829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTATAGACAGGAAGTTACAATTGAAGAAAAACATGCCGTGTGTATAGACAGGAAGTTACAATTGAAGAAAAACATGCCATGTGTATAGACAGGAAGTTACAATTGAAGAAAAACATGCCGTGTGTATAGACAGGAAGTTACAATTGAAGAAAAACATGCCGTGTGTATAGACAGGAAGTTACAATTGAAGAAAAACATGCCGTGTGTATAGACAGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406483 lncRNA upstream 10991 1296918 ~ 1298618 (+) False LOC110523075
TU406484 lncRNA upstream 10991 1296918 ~ 1298618 (+) True LOC110523075
TU406485 lncRNA upstream 32195 1276970 ~ 1277414 (+) True G357995
TU406494 lncRNA upstream 44791 1264374 ~ 1264818 (+) True G358003
TU406490 lncRNA upstream 74492 1234688 ~ 1235117 (+) True G357999
TU406512 lncRNA downstream 3919 1313748 ~ 1314018 (+) True G358016
TU406519 lncRNA downstream 19738 1329567 ~ 1336801 (+) True G358020
TU406522 lncRNA downstream 27158 1336987 ~ 1342784 (+) True G358023
TU406534 lncRNA downstream 53716 1363545 ~ 1367597 (+) True G358034
TU406575 lncRNA downstream 158526 1468355 ~ 1469054 (+) True G358074
XR_005051609.1 mRNA upstream 12127 1221663 ~ 1297482 (+) False LOC110523075
XR_005051610.1 mRNA upstream 12158 1221663 ~ 1297451 (+) False LOC110523075
XM_036976584.1 mRNA upstream 12207 1221663 ~ 1297402 (+) False LOC110523075
XR_005051611.1 mRNA upstream 12207 1221663 ~ 1297402 (+) False LOC110523075
XM_036976585.1 mRNA upstream 12208 1221663 ~ 1297401 (+) False LOC110523075
XM_036976600.1 mRNA downstream 399714 1709543 ~ 1828943 (+) False LOC110523072
XM_036976601.1 mRNA downstream 399714 1709543 ~ 1828943 (+) False LOC110523072
XM_036976595.1 mRNA downstream 399715 1709544 ~ 1828942 (+) False LOC110523072
XM_036976594.1 mRNA downstream 399715 1709544 ~ 1828943 (+) False LOC110523072
XM_036976596.1 mRNA downstream 399715 1709544 ~ 1828943 (+) False LOC110523072
TU405906 other upstream 368868 940235 ~ 940741 (+) True G357565
TU405905 other upstream 369736 939068 ~ 939873 (+) True G357564
TU405617 other upstream 893080 411289 ~ 416529 (+) False LOC110523070
TU405616 other upstream 893166 411289 ~ 416443 (+) False LOC110523070
TU406542 other downstream 78566 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 164966 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 590534 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 736845 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 1307049 2616878 ~ 2617330 (+) True G359084

Expression Profile