RNA id: TU406855


Basic Information

Item Value
RNA id TU406855
length 748
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G358295
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1708496 ~ 1709243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgattgacagagtcgaaagccttggccagatcaatgaatacggctgcacagtaatgtttcttatcgatggcggttaagatatcgtttaggaccttgagcgtggctgaggtgcacccatgaccagctctgaaaccagattgcgtagcagagaaggtatggtgagattcaaaatggtcggtaatctgtttgttgacttggctttcgaagaccttagaaaggcatggtaggatagatataggtctgtagcagtttgggtcaagagtgtccccccctttgaagagggggatgaccgcagctgctttccaatctatgggaatctcagacgacacgaaagagaggttgaacaggctagtaataggggtggcaacaatttcggcagatcattttagaaagaaagggtccagattgtctagcccggctgatttgtaggggtccagattttgcagctctttcagaacatcagctgaatggatttgggagaaggagaaatggggaaggcttgggcgagttgctgttgggggtgcagtgctgttgacaggggtaggagtagccaggtggaaagcatggccagcagtagaaaaatgcttattgaaatgttcaattatggtggatttatcagtggtgacagtgtttcctatcttcagtgcattgggcagctgggaggaggtgttcttattctccatggactttacagtgtcccagaacttttttgagttagtgttgcaagaagcaaatttctgcttgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406842 lncRNA upstream 10194 1698084 ~ 1698302 (+) True G358282
TU406785 lncRNA upstream 110071 1560081 ~ 1598425 (+) True G358230
TU406757 lncRNA upstream 199704 1508112 ~ 1508792 (+) True G358215
TU406575 lncRNA upstream 239442 1468355 ~ 1469054 (+) True G358074
TU406534 lncRNA upstream 340899 1363545 ~ 1367597 (+) True G358034
TU406899 lncRNA downstream 125152 1834395 ~ 1840629 (+) True G358319
TU406901 lncRNA downstream 127154 1836397 ~ 1842114 (+) False G358320
TU406895 lncRNA downstream 128041 1837284 ~ 1875702 (+) False G358318
TU406902 lncRNA downstream 131489 1840732 ~ 1871533 (+) True G358320
TU406896 lncRNA downstream 145396 1854639 ~ 1875702 (+) True G358318
XR_005051609.1 mRNA upstream 411014 1221663 ~ 1297482 (+) False LOC110523075
XR_005051610.1 mRNA upstream 411045 1221663 ~ 1297451 (+) False LOC110523075
XM_036976584.1 mRNA upstream 411094 1221663 ~ 1297402 (+) False LOC110523075
XR_005051611.1 mRNA upstream 411094 1221663 ~ 1297402 (+) False LOC110523075
XR_005051613.1 mRNA upstream 411095 1221663 ~ 1297401 (+) False LOC110523075
XM_036976600.1 mRNA downstream 300 1709543 ~ 1828943 (+) False LOC110523072
XM_036976601.1 mRNA downstream 300 1709543 ~ 1828943 (+) False LOC110523072
XM_036976595.1 mRNA downstream 301 1709544 ~ 1828942 (+) False LOC110523072
XM_036976594.1 mRNA downstream 301 1709544 ~ 1828943 (+) False LOC110523072
XM_036976596.1 mRNA downstream 301 1709544 ~ 1828943 (+) False LOC110523072
TU406577 other upstream 232762 1474795 ~ 1475734 (+) True G358076
TU406542 other upstream 318028 1388395 ~ 1390468 (+) True G358042
TU405906 other upstream 767755 940235 ~ 940741 (+) True G357565
TU405905 other upstream 768623 939068 ~ 939873 (+) True G357564
TU405618 other upstream 1292053 411289 ~ 416443 (+) True LOC110523070
TU407062 other downstream 191120 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 337431 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 907635 2616878 ~ 2617330 (+) True G359084
TU408046 other downstream 1292031 3001274 ~ 3002082 (+) True G359294
TU408069 other downstream 1390320 3099563 ~ 3107196 (+) True LOC110524930

Expression Profile