RNA id: TU406901


Basic Information

Item Value
RNA id TU406901
length 2039
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G358320
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1836397 ~ 1871533 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagacagtagatctagctggtctgtcataacataatagagacagtagatatagctgcactgtcataatataatagacattagatctagctggtctgtcataatataatagatacatagagacagctggtctgtcataatataatagagacagatctacctggtctgacacaatataatagagacagaagatctagctggtctgtcataatgtaatagacagtggatctagctgttttgtcataatataatagagacagtagatatcgctggtctgacataatataatagaaacagtagatctagctggtctgtcataatataacagagacagcagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatacatagagacagtagatctagctggtctgtcataatttaatagagacaaaatatctagctggtctgtcataatataacagagacagtagatatagctgcactgtcataatataatagacattagatcaagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacattagatctagctggtctgtcataatataatagagagatatatctagctgttttgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataaaagagacagtagatctagctggtctgtcataatataatatagacagtagatctagctggtctgtcacaatataatagagacagaagatctagctggtctgacaaaatataatagagacatagagacagtagatctagctggtctgtcacaatataatagagacagaagatctagctggtctgtcataatataatagagactatagatctagctggtctgtcacaatataatagagacagaagatctagctggtctgtcataatgtaatagagacagtggctctagctggtatgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtagatctagctgcactgtcataatataatagagacagtagatctagctggtctgtaataatataaaagatacagtgtgtatatatagctggtctgtcataatgtaatagagacagtggatctagctggcttgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtggatctagctggcttgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtagatctagctacactgtcataatatattagacacattagatctagctggtctgtcataatataatagagaaagtagatctagctggcttgtcataatataatagagacagtagatctcgctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctgcactgtcataatataatagagaccgtagatctagctgaaccttcataatataatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatataatagcgacggcagatctagctggtctgtcataatataatagagacagtagatctagctgcactgtcataatataatagagacattagatctagctggtctgtcataatatgatagagacagatctagctggtctgccataagtTAATAgagagtagatcgagctggtctgtcataatataatagagacagtaaatcgagctgttctgtcataatataatagagacagtagatctagctggtctgacataataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406855 lncRNA upstream 127154 1708496 ~ 1709243 (+) True G358295
TU406842 lncRNA upstream 138095 1698084 ~ 1698302 (+) True G358282
TU406785 lncRNA upstream 237972 1560081 ~ 1598425 (+) True G358230
TU406757 lncRNA upstream 327605 1508112 ~ 1508792 (+) True G358215
TU406575 lncRNA upstream 367343 1468355 ~ 1469054 (+) True G358074
TU406896 lncRNA downstream 12525 1854639 ~ 1875702 (+) True G358318
TU406891 lncRNA downstream 18180 1860294 ~ 1893452 (+) False G358317
TU406893 lncRNA downstream 30383 1872497 ~ 1881584 (+) False G358317
TU406892 lncRNA downstream 35750 1877864 ~ 1886874 (+) True G358317
TU407077 lncRNA downstream 72094 1914208 ~ 1914413 (+) True G358475
XM_036976594.1 mRNA upstream 7454 1709544 ~ 1828943 (+) False LOC110523072
XR_002473398.2 mRNA downstream 55244 1897358 ~ 1904914 (+) False LOC110523096
XR_002473397.2 mRNA downstream 55247 1897361 ~ 1904914 (+) False LOC110523096
XR_002473396.2 mRNA downstream 58163 1900277 ~ 1904914 (+) False LOC110523096
XM_036976604.1 mRNA downstream 624017 2466131 ~ 2494286 (+) False LOC110523104
XM_036976605.1 mRNA downstream 624017 2466131 ~ 2494286 (+) False LOC110523104
TU406577 other upstream 360663 1474795 ~ 1475734 (+) True G358076
TU406542 other upstream 445929 1388395 ~ 1390468 (+) True G358042
TU405906 other upstream 895656 940235 ~ 940741 (+) True G357565
TU405905 other upstream 896524 939068 ~ 939873 (+) True G357564
TU405618 other upstream 1419954 411289 ~ 416443 (+) True LOC110523070
TU407062 other downstream 58249 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 204560 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 774764 2616878 ~ 2617330 (+) True G359084
TU408046 other downstream 1159160 3001274 ~ 3002082 (+) True G359294
TU408069 other downstream 1257449 3099563 ~ 3107196 (+) True LOC110524930

Expression Profile