RNA id: TU406891


Basic Information

Item Value
RNA id TU406891
length 3722
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G358317
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1860294 ~ 1893452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcatattataatagagacattagatctagctggtctgtcataatataatagagacagtagatctagctagtatgtcataatataatagagacagtagattgagctggtctgtcatcatataatcgagacagtagatctagctggtctgtcataatatcatagagacaatagatctagctggtttgtcataatataatagatatagtagatgatgctggtctgtcaaaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggactgacataatataataaagacagtagatctagctggtctgtcattatatgatagagacagaagatctagatggtctgtcattatataatagagacagtagatctagctggtctgtcataatataatagagacagaagatctagatggtctgtcattatataatagagacagtagatctagctggtctgtcataatataatagagacatagagacagtagatctagctggtctgtcattatataatagcgacagcagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcatattatattagagacagtagatctagctggtctgttataatataatagagacagtaaatcgagctggtctgtcatattttaatagagacagtagatctagctggtctgccataagttaatagagagagtagatcgagctggtctgtcataatataatagagacagtagatctagctggtctgacataatataatagagacattagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacaaagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgacataatataatagagacatagagacagtagatctagctggtctgtcataatataatagcgacagcagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtatatcgagctggtctgacataataaaatagagacatagagacagtagatctagctggtctgtaataatatgatagagacagtggatctagctggtctgtcataatatactagagacagtagatctagctggtctgtcataatataatagagacagtaaatcgagctggtctttcatattttaatagagacagtagatctagctggtctgacataatataatagagacattagatctagctggtctgtcataatataatagagacagtagatctagctggtctgccataagttaatagagagagtagatcgagctggtctgtcataatataatagagacagtaaatcgagctgttctgtcataatataatagagacggtagatctagctggtctgacataatataatagagacattagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagatgcatagagacagcagatctagctggtctgtcattatataatagagacagtagatctagctggtctgacataatataatagagacatagagacagtagatctagctggtctgtcataatataatagcgacaacagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgacataatataatagagacatagagacagtagatctagctggtctgtcataatataatagaaacagtagatctagctattctgtcataatgtaatagagtgGGTGGAaatagctggtctatcataatataacaTAGACAAAgcgaaagtagatctagctggtctgtcataatataaaagagacagtagatctagcttgtctgtcataatacaatagagacagtatatcgatctggtctgtcataatgagctagatctactctctcaattatactacgaaagaccagctagatttactgtctcatattatgacagaccagctagatctattgtctcaactctattatgacagaccatctagatctattatctctattaaattatgacagaccagctacatctactgtatttattatattatgacagaccagctagatctaccttctctattatactacgaaagaccagctagatttactgtctctagtatattatgacagactagctagatctactgtctctattatattatgacagaccaacaagatctactgcctcaattatattatgacagaccatctagatctaccaCCTCAATTGTAttttggcagaccagctagatctattgtcccAATATATTGCTAAAGACCagatagatttactgtctctactatattatgacagagcagctagatctactgactccattataatatgacagaccatctagatctactgtgtcaatATTTCATGACGGAcctgctacatctactgtctgaattatattatgacagaccagctagaactactgtctctattatattatgacagaccagctagatctattgtctctattatattatgacagaccagctagatctactgtctcaattatatcatgacagacaatctagatctactgtctcttctttattatgaaagaccagctacatctacagtctctaatatattatgacagaccagctatatttactgtctcaatcatattatggcagaccagctagtctactgtctctactacattaacctccacatcaccagaggaacagaggagaagtaggataggggtacggctaaagactacacgaactggccgtctagcatgttcagaacagagagtaaaaggagcaggtatCTGGGCacaatagcatagattcaaggcatagtgcacagacaaaggtaaggtaggaagTGAgcacattggaggtaaacctaggcattgagtaatgaagagagagatatagtctctagagatatTTAAAcaaggtgatgtcatcgcatatgtaggaggtggaacaacatggttggttaaggcactttgagcagggctagaggatctacagtgaaataagacggtaatcactaaccaggacagtaatggaagaggcatattgatattagagagaggcatgcatagccaagtgaacatatgggtccagtgagtggatgggctggctggggacacggcgattcagacagttagcaggccgatgctaacagttagtaggccgggagTAAAGCAAGCTagtagctagcagttagcaggcctggttagcaagcaagcagttagcatggGCTAGCATGGGCTAGCAGTACAGACCGGGCAggtaagctagcagttagcaggccaggGCCGgcagctagcagttagtagaccggggcaagctAGCAGATAGCAGGCCGGGatagcaagcagttagcagaccgggttagcaagcaagcagttagcaatggctagcagttagcagaccggggaggcaagttagcagaccgggttagcaagcaagcagatagcaggggctagaaagttagcctttgggggacgtcgcgatgggggtaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406901 lncRNA upstream 18180 1836397 ~ 1842114 (+) False G358320
TU406899 lncRNA upstream 19665 1834395 ~ 1840629 (+) True G358319
TU406855 lncRNA upstream 151051 1708496 ~ 1709243 (+) True G358295
TU406842 lncRNA upstream 161992 1698084 ~ 1698302 (+) True G358282
TU406785 lncRNA upstream 261869 1560081 ~ 1598425 (+) True G358230
TU407077 lncRNA downstream 20756 1914208 ~ 1914413 (+) True G358475
TU407079 lncRNA downstream 21241 1914693 ~ 1915171 (+) True G358477
TU407081 lncRNA downstream 23926 1917378 ~ 1917647 (+) True G358479
TU407100 lncRNA downstream 42565 1936017 ~ 1936272 (+) True G358498
TU407122 lncRNA downstream 82984 1976436 ~ 1980579 (+) True G358520
XM_036976594.1 mRNA upstream 31351 1709544 ~ 1828943 (+) False LOC110523072
XR_002473398.2 mRNA downstream 3906 1897358 ~ 1904914 (+) False LOC110523096
XR_002473397.2 mRNA downstream 3909 1897361 ~ 1904914 (+) False LOC110523096
XR_002473396.2 mRNA downstream 6825 1900277 ~ 1904914 (+) False LOC110523096
XM_036976604.1 mRNA downstream 572679 2466131 ~ 2494286 (+) False LOC110523104
XM_036976605.1 mRNA downstream 572679 2466131 ~ 2494286 (+) False LOC110523104
TU406577 other upstream 384560 1474795 ~ 1475734 (+) True G358076
TU406542 other upstream 469826 1388395 ~ 1390468 (+) True G358042
TU405906 other upstream 919553 940235 ~ 940741 (+) True G357565
TU405905 other upstream 920421 939068 ~ 939873 (+) True G357564
TU405618 other upstream 1443851 411289 ~ 416443 (+) True LOC110523070
TU407062 other downstream 6911 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 153222 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 723426 2616878 ~ 2617330 (+) True G359084
TU408046 other downstream 1107822 3001274 ~ 3002082 (+) True G359294
TU408069 other downstream 1206111 3099563 ~ 3107196 (+) True LOC110524930

Expression Profile