RNA id: TU407077


Basic Information

Item Value
RNA id TU407077
length 206
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G358475
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1914208 ~ 1914413 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATAAATAGTaatcccctcagccagctggttctgaagctcagttcactaacccctACCAACCCAACAAAACCTCAGCACACAGAAAATTTGTCCCAAACAAATCACAAagcaaaaagaaaaaaaatatcacatattggaaagacaccacaacaaatccaagtaaacttcaatgctatttggctctaaacagacagtacatggtggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406891 lncRNA upstream 20756 1860294 ~ 1893452 (+) False G358317
TU406892 lncRNA upstream 27334 1877864 ~ 1886874 (+) True G358317
TU406893 lncRNA upstream 32624 1872497 ~ 1881584 (+) False G358317
TU406895 lncRNA upstream 38506 1837284 ~ 1875702 (+) False G358318
TU406896 lncRNA upstream 38506 1854639 ~ 1875702 (+) True G358318
TU407079 lncRNA downstream 280 1914693 ~ 1915171 (+) True G358477
TU407081 lncRNA downstream 2965 1917378 ~ 1917647 (+) True G358479
TU407100 lncRNA downstream 21604 1936017 ~ 1936272 (+) True G358498
TU407122 lncRNA downstream 62023 1976436 ~ 1980579 (+) True G358520
TU407211 lncRNA downstream 139383 2053796 ~ 2093401 (+) True G358597
XR_002473398.2 mRNA upstream 9294 1897358 ~ 1904914 (+) False LOC110523096
XR_002473397.2 mRNA upstream 9294 1897361 ~ 1904914 (+) False LOC110523096
XR_002473396.2 mRNA upstream 9294 1900277 ~ 1904914 (+) False LOC110523096
XM_036976594.1 mRNA upstream 85265 1709544 ~ 1828943 (+) False LOC110523072
XM_036976604.1 mRNA downstream 551718 2466131 ~ 2494286 (+) False LOC110523104
XM_036976605.1 mRNA downstream 551718 2466131 ~ 2494286 (+) False LOC110523104
XM_036976602.1 mRNA downstream 556295 2470708 ~ 2494286 (+) False LOC110523104
XM_036976603.1 mRNA downstream 556295 2470708 ~ 2494286 (+) False LOC110523104
XM_036976606.1 mRNA downstream 741285 2655698 ~ 3017288 (+) True LOC118964552
TU407062 other upstream 9330 1900363 ~ 1904878 (+) True LOC110523096
TU406577 other upstream 438474 1474795 ~ 1475734 (+) True G358076
TU406542 other upstream 523740 1388395 ~ 1390468 (+) True G358042
TU405906 other upstream 973467 940235 ~ 940741 (+) True G357565
TU405905 other upstream 974335 939068 ~ 939873 (+) True G357564
TU407205 other downstream 132261 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 702465 2616878 ~ 2617330 (+) True G359084
TU408046 other downstream 1086861 3001274 ~ 3002082 (+) True G359294
TU408069 other downstream 1185150 3099563 ~ 3107196 (+) True LOC110524930
TU408186 other downstream 1302531 3216944 ~ 3217529 (+) True G359369

Expression Profile