RNA id: TU407220


Basic Information

Item Value
RNA id TU407220
length 243
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G358603
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 2070861 ~ 2083937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgcctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctaactaactgtctgtctgtctctgtctctctctgtctctctatgtctctgtctctgtctctctgtctctgtctttgtcgctgtctgtctctctgtctgtctgtctaactgtctgtctaactgtctgtctgtctctgtctgtctctgtctgtctgtctgtctgtctgtctaactgtctgtctgtctctgtctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU407122 lncRNA upstream 90282 1976436 ~ 1980579 (+) True G358520
TU407100 lncRNA upstream 134589 1936017 ~ 1936272 (+) True G358498
TU407081 lncRNA upstream 153214 1917378 ~ 1917647 (+) True G358479
TU407079 lncRNA upstream 155690 1914693 ~ 1915171 (+) True G358477
TU407077 lncRNA upstream 156448 1914208 ~ 1914413 (+) True G358475
TU407393 lncRNA downstream 163351 2247288 ~ 2247643 (+) True G358755
TU407396 lncRNA downstream 181848 2265785 ~ 2265991 (+) True G358758
TU407410 lncRNA downstream 199526 2283463 ~ 2283726 (+) True G358772
TU407529 lncRNA downstream 314643 2398580 ~ 2398808 (+) True G358877
TU407537 lncRNA downstream 322804 2406741 ~ 2407137 (+) True G358884
XR_002473398.2 mRNA upstream 165947 1897358 ~ 1904914 (+) False LOC110523096
XR_002473397.2 mRNA upstream 165947 1897361 ~ 1904914 (+) False LOC110523096
XR_002473396.2 mRNA upstream 165947 1900277 ~ 1904914 (+) False LOC110523096
XM_036976598.1 mRNA upstream 241918 1709544 ~ 1828943 (+) False LOC110523072
XM_036976604.1 mRNA downstream 382194 2466131 ~ 2494286 (+) False LOC110523104
XM_036976605.1 mRNA downstream 382194 2466131 ~ 2494286 (+) False LOC110523104
XM_036976602.1 mRNA downstream 386771 2470708 ~ 2494286 (+) False LOC110523104
XM_036976603.1 mRNA downstream 386771 2470708 ~ 2494286 (+) False LOC110523104
XM_036976606.1 mRNA downstream 571761 2655698 ~ 3017288 (+) True LOC118964552
TU407205 other upstream 23836 2046674 ~ 2047025 (+) True G358596
TU407062 other upstream 165983 1900363 ~ 1904878 (+) True LOC110523096
TU406577 other upstream 595127 1474795 ~ 1475734 (+) True G358076
TU406542 other upstream 680393 1388395 ~ 1390468 (+) True G358042
TU405906 other upstream 1130120 940235 ~ 940741 (+) True G357565
TU407791 other downstream 532941 2616878 ~ 2617330 (+) True G359084
TU408046 other downstream 917337 3001274 ~ 3002082 (+) True G359294
TU408069 other downstream 1015626 3099563 ~ 3107196 (+) True LOC110524930
TU408186 other downstream 1133007 3216944 ~ 3217529 (+) True G359369
TU408187 other downstream 1141120 3225057 ~ 3229530 (+) False G359370

Expression Profile