RNA id: TU407410


Basic Information

Item Value
RNA id TU407410
length 264
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G358772
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 2283463 ~ 2283726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctaacattaggctctaactagtaAAGCAAACAGCTCTGGGAAACTAATAATAACGTCCTCTATGGAGccagcctgctaacgttagccatctagctaacagtacactttagcttaagacatatagctagctagctaggtaaacaatgaacctagctaggtaaacaacatTTAAGATCACAAAcgtcacgtaatgttagctaacgagccagcccgctaacgttagctaattaaACAACAATGAATAACTTGCCAACAATGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU407396 lncRNA upstream 17472 2265785 ~ 2265991 (+) True G358758
TU407393 lncRNA upstream 35820 2247288 ~ 2247643 (+) True G358755
TU407211 lncRNA upstream 190062 2053796 ~ 2093401 (+) True G358597
TU407220 lncRNA upstream 199526 2070861 ~ 2083937 (+) True G358603
TU407122 lncRNA upstream 302884 1976436 ~ 1980579 (+) True G358520
TU407529 lncRNA downstream 114854 2398580 ~ 2398808 (+) True G358877
TU407537 lncRNA downstream 123015 2406741 ~ 2407137 (+) True G358884
TU407563 lncRNA downstream 145703 2429429 ~ 2429689 (+) True G358910
TU407574 lncRNA downstream 153336 2437062 ~ 2437283 (+) True G358920
TU407589 lncRNA downstream 173792 2457518 ~ 2458077 (+) False G358932
XR_002473398.2 mRNA upstream 378549 1897358 ~ 1904914 (+) False LOC110523096
XR_002473397.2 mRNA upstream 378549 1897361 ~ 1904914 (+) False LOC110523096
XR_002473396.2 mRNA upstream 378549 1900277 ~ 1904914 (+) False LOC110523096
XM_036976598.1 mRNA upstream 454520 1709544 ~ 1828943 (+) False LOC110523072
XM_036976604.1 mRNA downstream 182405 2466131 ~ 2494286 (+) False LOC110523104
XM_036976605.1 mRNA downstream 182405 2466131 ~ 2494286 (+) False LOC110523104
XM_036976602.1 mRNA downstream 186982 2470708 ~ 2494286 (+) False LOC110523104
XM_036976603.1 mRNA downstream 186982 2470708 ~ 2494286 (+) False LOC110523104
XM_036976606.1 mRNA downstream 371972 2655698 ~ 3017288 (+) True LOC118964552
TU407205 other upstream 236438 2046674 ~ 2047025 (+) True G358596
TU407062 other upstream 378585 1900363 ~ 1904878 (+) True LOC110523096
TU406577 other upstream 807729 1474795 ~ 1475734 (+) True G358076
TU406542 other upstream 892995 1388395 ~ 1390468 (+) True G358042
TU405906 other upstream 1342722 940235 ~ 940741 (+) True G357565
TU407791 other downstream 333152 2616878 ~ 2617330 (+) True G359084
TU408046 other downstream 717548 3001274 ~ 3002082 (+) True G359294
TU408069 other downstream 815837 3099563 ~ 3107196 (+) True LOC110524930
TU408186 other downstream 933218 3216944 ~ 3217529 (+) True G359369
TU408187 other downstream 941331 3225057 ~ 3229530 (+) False G359370

Expression Profile