RNA id: TU407563


Basic Information

Item Value
RNA id TU407563
length 261
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G358910
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 2429429 ~ 2429689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccattttaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgagcttttaacggacctctgagactattac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU407537 lncRNA upstream 22292 2406741 ~ 2407137 (+) True G358884
TU407529 lncRNA upstream 30621 2398580 ~ 2398808 (+) True G358877
TU407410 lncRNA upstream 145703 2283463 ~ 2283726 (+) True G358772
TU407396 lncRNA upstream 163438 2265785 ~ 2265991 (+) True G358758
TU407393 lncRNA upstream 181786 2247288 ~ 2247643 (+) True G358755
TU407574 lncRNA downstream 7373 2437062 ~ 2437283 (+) True G358920
TU407589 lncRNA downstream 27829 2457518 ~ 2458077 (+) False G358932
TU407590 lncRNA downstream 27910 2457599 ~ 2458077 (+) False G358932
TU407592 lncRNA downstream 27910 2457599 ~ 2458077 (+) False G358932
TU407593 lncRNA downstream 27910 2457599 ~ 2458077 (+) True G358932
XR_002473398.2 mRNA upstream 524515 1897358 ~ 1904914 (+) False LOC110523096
XR_002473397.2 mRNA upstream 524515 1897361 ~ 1904914 (+) False LOC110523096
XR_002473396.2 mRNA upstream 524515 1900277 ~ 1904914 (+) False LOC110523096
XM_036976598.1 mRNA upstream 600486 1709544 ~ 1828943 (+) False LOC110523072
XM_036976604.1 mRNA downstream 36442 2466131 ~ 2494286 (+) False LOC110523104
XM_036976605.1 mRNA downstream 36442 2466131 ~ 2494286 (+) False LOC110523104
XM_036976602.1 mRNA downstream 41019 2470708 ~ 2494286 (+) False LOC110523104
XM_036976603.1 mRNA downstream 41019 2470708 ~ 2494286 (+) False LOC110523104
XM_036976606.1 mRNA downstream 226009 2655698 ~ 3017288 (+) True LOC118964552
TU407205 other upstream 382404 2046674 ~ 2047025 (+) True G358596
TU407062 other upstream 524551 1900363 ~ 1904878 (+) True LOC110523096
TU406577 other upstream 953695 1474795 ~ 1475734 (+) True G358076
TU406542 other upstream 1038961 1388395 ~ 1390468 (+) True G358042
TU405906 other upstream 1488688 940235 ~ 940741 (+) True G357565
TU407791 other downstream 187189 2616878 ~ 2617330 (+) True G359084
TU408046 other downstream 571585 3001274 ~ 3002082 (+) True G359294
TU408069 other downstream 669874 3099563 ~ 3107196 (+) True LOC110524930
TU408186 other downstream 787255 3216944 ~ 3217529 (+) True G359369
TU408187 other downstream 795368 3225057 ~ 3229530 (+) False G359370

Expression Profile