RNA id: TU407732


Basic Information

Item Value
RNA id TU407732
length 202
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G359033
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 2549207 ~ 2549408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtttcccatttcctagatggccgtacttcttcattgcacaaaggaataacctcaaccaaattccaaagactggtgacatccagtggaatcggtaggaactgaaaacaagtgcctatgaaatatcgtttcccaatagcactatttttatgtttggaaaaataacgttcccaatgtaaacggcctatttctcaggcccatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU407729 lncRNA upstream 1165 2547746 ~ 2548042 (+) True G359030
TU407707 lncRNA upstream 11696 2534593 ~ 2537511 (+) True G359010
TU407709 lncRNA upstream 12117 2535677 ~ 2537090 (+) True G359012
TU407708 lncRNA upstream 13053 2535142 ~ 2536154 (+) True G359011
TU407617 lncRNA upstream 54915 2492156 ~ 2494292 (+) True LOC110523104
TU407765 lncRNA downstream 43330 2592738 ~ 2593396 (+) True G359063
TU407801 lncRNA downstream 80019 2629427 ~ 2629700 (+) True G359094
TU407904 lncRNA downstream 194377 2743785 ~ 2746911 (+) True G359174
TU407920 lncRNA downstream 224146 2773554 ~ 2774697 (+) True G359186
TU407919 lncRNA downstream 225401 2774809 ~ 2777183 (+) True G359185
XM_036976604.1 mRNA upstream 54921 2466131 ~ 2494286 (+) False LOC110523104
XM_036976605.1 mRNA upstream 54921 2466131 ~ 2494286 (+) False LOC110523104
XM_036976602.1 mRNA upstream 54921 2470708 ~ 2494286 (+) False LOC110523104
XM_036976603.1 mRNA upstream 54921 2470708 ~ 2494286 (+) False LOC110523104
XR_002473396.2 mRNA upstream 644293 1900277 ~ 1904914 (+) False LOC110523096
XM_036976606.1 mRNA downstream 106290 2655698 ~ 3017288 (+) True LOC118964552
XM_036976607.1 mRNA downstream 483441 3032849 ~ 3107239 (+) False LOC110524930
XM_036976610.1 mRNA downstream 483441 3032849 ~ 3107239 (+) False LOC110524930
XM_036976611.1 mRNA downstream 483441 3032849 ~ 3107239 (+) False LOC110524930
XR_005051623.1 mRNA downstream 483441 3032849 ~ 3107239 (+) False LOC110524930
TU407205 other upstream 502182 2046674 ~ 2047025 (+) True G358596
TU407062 other upstream 644329 1900363 ~ 1904878 (+) True LOC110523096
TU406577 other upstream 1073473 1474795 ~ 1475734 (+) True G358076
TU406542 other upstream 1158739 1388395 ~ 1390468 (+) True G358042
TU405906 other upstream 1608466 940235 ~ 940741 (+) True G357565
TU407791 other downstream 67470 2616878 ~ 2617330 (+) True G359084
TU408046 other downstream 451866 3001274 ~ 3002082 (+) True G359294
TU408069 other downstream 550155 3099563 ~ 3107196 (+) True LOC110524930
TU408186 other downstream 667536 3216944 ~ 3217529 (+) True G359369
TU408187 other downstream 675649 3225057 ~ 3229530 (+) False G359370

Expression Profile