RNA id: TU408103


Basic Information

Item Value
RNA id TU408103
length 233
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G359328
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3113655 ~ 3121918 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtcaccattcagtttccataacatactgagttctacagctgtcaccattcagtttccataacatactgaatcctacagctgtcaccattcagttcccataacatactgaatcctacagctgtcaccattcagtttccataacatactgaatcctacagctgtcaccattcagttcccataacatactgaatactacagctgtcaccattcagtttccataacatactgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408092 lncRNA upstream 33688 3077039 ~ 3079967 (+) True G359323
TU408063 lncRNA upstream 53755 3059343 ~ 3059900 (+) False LOC110524930
TU408067 lncRNA upstream 53755 3059343 ~ 3059900 (+) False LOC110524930
TU407943 lncRNA upstream 132793 2979184 ~ 2980862 (+) True G359209
TU408029 lncRNA upstream 135524 2977620 ~ 2978131 (+) True G359277
TU408101 lncRNA downstream 10103 3127418 ~ 3128171 (+) True G359327
TU408110 lncRNA downstream 22328 3139643 ~ 3143377 (+) True G359333
TU408116 lncRNA downstream 29299 3146614 ~ 3147509 (+) True G359338
TU408119 lncRNA downstream 34113 3151428 ~ 3151728 (+) True G359341
TU408128 lncRNA downstream 37395 3154710 ~ 3158237 (+) False G359343
XR_005051623.1 mRNA upstream 6416 3032849 ~ 3107239 (+) False LOC110524930
XM_036976612.1 mRNA downstream 22727 3140042 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976613.1 mRNA downstream 23103 3140418 ~ 3148590 (+) False si:busm1-57f23.1
XM_021601519.2 mRNA downstream 23344 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_021601518.2 mRNA downstream 27822 3145137 ~ 3148590 (+) True si:busm1-57f23.1
XM_036976617.1 mRNA downstream 141616 3258931 ~ 3329266 (+) False musk
TU408069 other upstream 6459 3099563 ~ 3107196 (+) True LOC110524930
TU408046 other upstream 111573 3001274 ~ 3002082 (+) True G359294
TU407791 other upstream 496325 2616878 ~ 2617330 (+) True G359084
TU407205 other upstream 1066630 2046674 ~ 2047025 (+) True G358596
TU407062 other upstream 1208777 1900363 ~ 1904878 (+) True LOC110523096
TU408186 other downstream 99629 3216944 ~ 3217529 (+) True G359369
TU408187 other downstream 107742 3225057 ~ 3229530 (+) False G359370
TU408188 other downstream 107742 3225057 ~ 3231615 (+) True G359370
TU408189 other downstream 112279 3229594 ~ 3237305 (+) True G359371
TU408266 other downstream 230194 3347509 ~ 3379319 (+) True G359438

Expression Profile