RNA id: TU408119



Basic Information


Item Value
RNA id TU408119
length 301
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G359341
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3151428 ~ 3151728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTACACATCTTAGAGAAgctgaaatggtcaaaccacacggacactgtggtgaagaaggcacgacagcgactcttcaacctcaggatgctgaagaagTTTGTCCCGGGGGCCTCACATTGATTTACAGGAGCACCAGCGAGAGCATACTGTTGGGATGCATCACATCATGGTACGGCAACTCCCCTGCGGactgcaaggcacttcagaggctGATATGTTCAGCCAAGTGCACTATTGGGTGACCAACAAAAACCAGCACTATTTtgtccttacagtgaaattcttacttacaagcccatat

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU408116 lncRNA upstream 3919 3146614 ~ 3147509 (+) True G359338
TU408110 lncRNA upstream 8051 3139643 ~ 3143377 (+) True G359333
TU408101 lncRNA upstream 23257 3127418 ~ 3128171 (+) True G359327
TU408102 lncRNA upstream 29510 3113655 ~ 3121918 (+) False G359328
TU408128 lncRNA downstream 2982 3154710 ~ 3158237 (+) False G359343
TU408129 lncRNA downstream 2982 3154710 ~ 3158237 (+) False G359343
TU408132 lncRNA downstream 2982 3154710 ~ 3158237 (+) False G359343
TU408133 lncRNA downstream 2982 3154710 ~ 3158237 (+) False G359343
TU408136 lncRNA downstream 2982 3154710 ~ 3158237 (+) False G359343
XM_036976612.1 mRNA upstream 2838 3140042 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976613.1 mRNA upstream 2838 3140418 ~ 3148590 (+) False si:busm1-57f23.1
XM_021601519.2 mRNA upstream 2838 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_021601518.2 mRNA upstream 2838 3145137 ~ 3148590 (+) True si:busm1-57f23.1
XR_005051623.1 mRNA upstream 44189 3032849 ~ 3107239 (+) False LOC110524930
XM_036976617.1 mRNA downstream 107203 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA downstream 109812 3261540 ~ 3329266 (+) True musk
XM_036976532.1 mRNA downstream 396220 3547948 ~ 3635115 (+) True grin3a
XM_036976627.1 mRNA downstream 1409622 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 1409622 4561350 ~ 4598573 (+) False LOC110523122
TU408069 other upstream 44232 3099563 ~ 3107196 (+) True LOC110524930
TU408046 other upstream 149346 3001274 ~ 3002082 (+) True G359294
TU407791 other upstream 534098 2616878 ~ 2617330 (+) True G359084
TU407205 other upstream 1104403 2046674 ~ 2047025 (+) True G358596
TU407062 other upstream 1246550 1900363 ~ 1904878 (+) True LOC110523096
TU408186 other downstream 65216 3216944 ~ 3217529 (+) True G359369
TU408187 other downstream 73329 3225057 ~ 3229530 (+) False G359370
TU408188 other downstream 73329 3225057 ~ 3231615 (+) True G359370
TU408189 other downstream 77866 3229594 ~ 3237305 (+) True G359371
TU408266 other downstream 195781 3347509 ~ 3379319 (+) True G359438

Expression Profile


TU408119 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
End of interactive chart.

TU408119 Expression in each Bioproject

Bar chart with 9 bars.
TU408119 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 12.
End of interactive chart.