RNA id: TU408136


Basic Information

Item Value
RNA id TU408136
length 2984
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G359343
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3154710 ~ 3158237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcacatttcagacgtGGAATGCAACACAATGTTCTATTTAAAACAACTAAAGAATAATAATATAACCTGAACGACTCAAATCACCCTAAGGAAAATCAAAGCTAAAATTGTGTGTTTTGATCTCttttaaaaatgtccacagtggCAGGTTATTCCAGAGACGGAGGGCATATTAATTAAAGGttgcctctccatgtctcttggtccccctcaggttctctggcattctattccagaggctgggggcatagtaattAAAGGttgcctctccatgtctcttggtcccCCTCAAGTTCTCTGGCAGACTATTCCAGAGAATTGAGGGCATAGTAATTAAAGgttgcctctccttgtctcttggtccccctcaggttctctggcattCTATTCCAGAGACTGAGGGCATAGTAATTAAAGgttgcctctccttgtctcttggtccccctcaggttctctggcattCTATTCCAGAGACTGAGGGCATAGTAattaaaggctgtctctccatgcctcttggtccccctcaggttctctggcattCTATTCCAGAGGCTgtgggcataataactaaagtttgcctctccatgtctcctggtccgaggctttgggatagttaaaaggccagtacCAGAGGACCTGAGGAACATACTGGGTACAAAACTTAAGTGCGTGTGTGTATTGGGGTTAGAATAATCTTTAAATTAATTCCAAAACTCACAGGCggccagtgcagagaccttagaactggtgtaatgtgttctctccgtctagtcttggtcagtacccgcgctgcagcattctgtatgttttgcagttgaccaatggctttcttgagtagaccagacaggagagcattacagtagtcaagcctgcttatAATAAAAGtatggatgagtctctctgtatcagcctgagagaaaCGCCTGCACCgtggcaatgttcctcaggtggtaaaaaaactattttggtcacattcctaaaGTGTGATTCAAAATggagttcagaatctaaaataacagCCAGTTTTTTAactggtgttttatctttattgcctGTGATTTAAAATGTGCGTTgagattctctctctgtgctttgtcTACAACAACTATTAGAAGGACATCATGGTCAACAGTCAGGAATGCACCATTTAAATACAAGGACATagagctgtttggcatctgtATTGGCTCTAGGATCATTTGCCTCTAACTAAGGCTGTCTCTCTGTTGGCTCTGGGATCATTTACCACTTGAACTAACGCTGTGGTGGGCTGCAAAACCAGATTGGTATTTGTCAAAAATACAGTTGGCACTTTAAAAATCATTCAGCTGTTTGAAAACTAATTTTTCCAGGATTTTGGTTAAGAATGGAAACTATTTTGAAGAAGGTGGTGGGGACATACAGTATCTGGTACTGTAAGACAATTAGGACCAATGGAGGTCAACAATCCTTTTGGGCAGATTGAATTCAGATTTCATATGCCGGGTCAAAACTGTCCCCTGGTCACAAATATTTGAAACTCTTCAAAACCACCCCTATGACCCCCAGTTAAGTCACGTCCTGTAATCACAGGAATCTGAAAATATATGTACGGCCTCCAGAAAAACATGAAGCATCCGGAGGAAGCTCCCAATGTAAATGACGCCACTGGCCAATATTAGGTAATTATAATCTTTGCTATGATCAGACAATCACTTTATAGGGCTTATTAAACAGTTAGTCCGGGACAAgtaatctgattggtcaaaagtacATTCCAGCCATGATGTTAGTGATCATAACACCTCCACTAGCCAGTTAGTTAGCTAGCCGCGTGTTATTGAAAAATGACTGAATCACTTCATGATTCAACAGTAACAAActggcagctagctagcatttatttgttgtgttgtcAAGCCTCTATTACAGAAACAGGAGTTAGCTGTCTAGGCGGAGGAATGACAACTCATTCAGGAGCTAGCTGTTTGCTGTGTAGGTGGAGGGATGACTACTATTTCAGCTGTGTAGGTGGAGGGATGACTACTAGTTCAGCTGTGTAGGTGGAGGGATGACTACTAGTTCAGCTGTGTAGGTGGAGGGATGACTACTAGTTCAGCTGTGTAGGTGGAGGAATGACTACTAGTTCAGCTGTGTAGGTGGAGGGATGACTACTAGTTCAGCTGTGTAGGTGGAGGGATGACTACTAGTTCAGCTGTCTAGGTGGAGGGATGACTACTAGTTCAGCTGTCTAGGTGTAGGGATGACTACTAGTTCAGCTGTGTAGGTGGAGGGATGACTACTAGTTCAGCTGTGTAGTTGGAGGGATGACTACTAGTTCAGCTGTGTAGGTGGAGGGATGACTAGTCCTTCTGGTACCAAAAGGGCTTTCTATTAGATGCATCAGGTTCATTGAAAAATATTTCCATATTTAACTTTTTTCTACTTGTTGCTTTCAGTTCATCACTGATCATCATCTTTCAGGTTGACATTGAACAATACCTTCCCTGGACATCTGTTTCCTCCTGCAGTCTTTCAGGTTTAGTTATGGTGTAGTatgtctgagtcccaaatggcaccctattccctatacagcgCAACGtcctggtctaaggtagtgcactatatagggaatagggctctggtataaagtagtgcactatatagggaattgggctctggtctaaagtagtgcactatatagggaatagggctctggtctaaagtagtgcactatatagggaatagggtgccatttgggtcacaaGTATTAGTTTAATCTTGAACGTCCTCTTCCCTGGACACTATGTCCCTTCATGTATTCTGTGTACTGTTGTTCTGGTATGTGTTGTGTGAAGTCCAGTCTGTGTGAAGTCCAGTCTGTGTGAAGTCCAGTCTGTGTGAAGTCCACTCCTTACACCTCTGTCTCGGTCTTGGTGATCTTGGAGCTGAGAAGCTGAGACAAGACTATTTGCTGCTGGTTGTACCTATAGGACACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408119 lncRNA upstream 2982 3151428 ~ 3151728 (+) True G359341
TU408116 lncRNA upstream 7201 3146614 ~ 3147509 (+) True G359338
TU408110 lncRNA upstream 11333 3139643 ~ 3143377 (+) True G359333
TU408101 lncRNA upstream 26539 3127418 ~ 3128171 (+) True G359327
TU408105 lncRNA upstream 35539 3113655 ~ 3119171 (+) True G359328
TU408160 lncRNA downstream 5228 3163465 ~ 3164180 (+) True G359347
TU408175 lncRNA downstream 27797 3186034 ~ 3186300 (+) True G359358
TU408177 lncRNA downstream 30903 3189140 ~ 3189362 (+) True G359360
TU408179 lncRNA downstream 37024 3195261 ~ 3195483 (+) True G359362
TU408181 lncRNA downstream 41050 3199287 ~ 3199495 (+) True G359364
XM_036976612.1 mRNA upstream 6120 3140042 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976613.1 mRNA upstream 6120 3140418 ~ 3148590 (+) False si:busm1-57f23.1
XM_021601519.2 mRNA upstream 6120 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_021601518.2 mRNA upstream 6120 3145137 ~ 3148590 (+) True si:busm1-57f23.1
XM_036976609.1 mRNA upstream 47471 3032865 ~ 3107239 (+) False LOC110524930
XM_036976617.1 mRNA downstream 100694 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA downstream 103303 3261540 ~ 3329266 (+) True musk
XM_036976532.1 mRNA downstream 389711 3547948 ~ 3635115 (+) True grin3a
XM_036976627.1 mRNA downstream 1403113 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 1403113 4561350 ~ 4598573 (+) False LOC110523122
TU408069 other upstream 47514 3099563 ~ 3107196 (+) True LOC110524930
TU408046 other upstream 152628 3001274 ~ 3002082 (+) True G359294
TU407791 other upstream 537380 2616878 ~ 2617330 (+) True G359084
TU407205 other upstream 1107685 2046674 ~ 2047025 (+) True G358596
TU407062 other upstream 1249832 1900363 ~ 1904878 (+) True LOC110523096
TU408186 other downstream 58707 3216944 ~ 3217529 (+) True G359369
TU408187 other downstream 66820 3225057 ~ 3229530 (+) False G359370
TU408188 other downstream 66820 3225057 ~ 3231615 (+) True G359370
TU408189 other downstream 71357 3229594 ~ 3237305 (+) True G359371
TU408266 other downstream 189272 3347509 ~ 3379319 (+) True G359438

Expression Profile