RNA id: TU408181


Basic Information

Item Value
RNA id TU408181
length 209
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G359364
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3199287 ~ 3199495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTATAACACTGGAGGGCAGTGCAGTGTGTAGTTACCTTCCCTAACACTAGAGGGCAGTGCAGGGTGTAGTTACCTTCTATAACACTAGAGGGCAGTGCAGGGTGTAGTTACCTTCTCTAACACTAGAGGGCAGTGCATGGTGTAGTTACCTTCTATAACACTAGAGGGCAGTGCAGGGTGTAGTTACCTTCTATAACACTAGAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408179 lncRNA upstream 3804 3195261 ~ 3195483 (+) True G359362
TU408177 lncRNA upstream 9925 3189140 ~ 3189362 (+) True G359360
TU408175 lncRNA upstream 12987 3186034 ~ 3186300 (+) True G359358
TU408160 lncRNA upstream 35107 3163465 ~ 3164180 (+) True G359347
TU408149 lncRNA upstream 41050 3154710 ~ 3158237 (+) False G359343
TU408191 lncRNA downstream 34331 3233826 ~ 3235728 (+) True G359373
TU408193 lncRNA downstream 40179 3239674 ~ 3239982 (+) True G359375
TU408194 lncRNA downstream 41530 3241025 ~ 3241309 (+) True G359376
TU408196 lncRNA downstream 42683 3242178 ~ 3242473 (+) True G359378
TU408290 lncRNA downstream 224205 3423700 ~ 3423974 (+) True G359462
XM_036976612.1 mRNA upstream 50697 3140042 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976613.1 mRNA upstream 50697 3140418 ~ 3148590 (+) False si:busm1-57f23.1
XM_021601519.2 mRNA upstream 50697 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_021601518.2 mRNA upstream 50697 3145137 ~ 3148590 (+) True si:busm1-57f23.1
XM_036976609.1 mRNA upstream 92048 3032865 ~ 3107239 (+) False LOC110524930
XM_036976617.1 mRNA downstream 59436 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA downstream 62045 3261540 ~ 3329266 (+) True musk
XM_036976532.1 mRNA downstream 348453 3547948 ~ 3635115 (+) True grin3a
XM_036976627.1 mRNA downstream 1361855 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 1361855 4561350 ~ 4598573 (+) False LOC110523122
TU408069 other upstream 92091 3099563 ~ 3107196 (+) True LOC110524930
TU408046 other upstream 197205 3001274 ~ 3002082 (+) True G359294
TU407791 other upstream 581957 2616878 ~ 2617330 (+) True G359084
TU407205 other upstream 1152262 2046674 ~ 2047025 (+) True G358596
TU407062 other upstream 1294409 1900363 ~ 1904878 (+) True LOC110523096
TU408186 other downstream 17449 3216944 ~ 3217529 (+) True G359369
TU408187 other downstream 25562 3225057 ~ 3229530 (+) False G359370
TU408188 other downstream 25562 3225057 ~ 3231615 (+) True G359370
TU408189 other downstream 30099 3229594 ~ 3237305 (+) True G359371
TU408266 other downstream 148014 3347509 ~ 3379319 (+) True G359438

Expression Profile