RNA id: TU408891


Basic Information

Item Value
RNA id TU408891
length 316
lncRNA type intronic
GC content 0.43
exon number 2
gene id G359951
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3630854 ~ 3631692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taccaacagaaacacaacatgacagagtagagactgataccaacagaaacacaacatgacagagtagaggattggtaccagcagaaacacaacatgacagagtagagactgataccaacagaaacacaacatgacagagtagagactgataccagcagaaacacaacatgacagagtagaggattggtaccagcagaaacacaacatgacagagtagagactgataccaacagaaacacaacatgacagagtagagactgataccagcagaaacacaacatgacagagtagagactggtaccagcagaaacacaac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408890 lncRNA upstream 5080 3624889 ~ 3625774 (+) True G359950
TU408889 lncRNA upstream 11167 3619393 ~ 3619687 (+) True G359949
TU408881 lncRNA upstream 15539 3614890 ~ 3615315 (+) True G359943
TU408879 lncRNA upstream 16248 3612391 ~ 3614606 (+) True G359941
TU408868 lncRNA upstream 35435 3594710 ~ 3595419 (+) True G359932
TU408899 lncRNA downstream 61231 3692923 ~ 3704098 (+) False G359957
TU408907 lncRNA downstream 61231 3692923 ~ 3707891 (+) False G359957
TU408908 lncRNA downstream 61231 3692923 ~ 3706403 (+) False G359957
TU408911 lncRNA downstream 61231 3692923 ~ 3707891 (+) False G359957
TU408913 lncRNA downstream 61231 3692923 ~ 3726946 (+) False G359957
XM_036976617.1 mRNA upstream 301588 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA upstream 301588 3261540 ~ 3329266 (+) True musk
XM_036976613.1 mRNA upstream 482264 3140418 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976627.1 mRNA downstream 929658 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 929658 4561350 ~ 4598573 (+) False LOC110523122
XM_036976624.1 mRNA downstream 929659 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA downstream 929660 4561352 ~ 4598776 (+) True LOC110523122
XM_036976633.1 mRNA downstream 1022454 4654146 ~ 4670585 (+) True LOC110523121
TU408266 other upstream 251535 3347509 ~ 3379319 (+) True G359438
TU408189 other upstream 393549 3229594 ~ 3237305 (+) True G359371
TU408188 other upstream 399239 3225057 ~ 3231615 (+) True G359370
TU408187 other upstream 401324 3225057 ~ 3229530 (+) False G359370
TU408186 other upstream 413325 3216944 ~ 3217529 (+) True G359369
TU409106 other downstream 377056 4008748 ~ 4011356 (+) True G360121
TU409255 other downstream 712390 4344082 ~ 4345517 (+) True G360234
TU409284 other downstream 788049 4419741 ~ 4420069 (+) True G360261
TU409312 other downstream 915343 4547035 ~ 4547856 (+) True G360287
TU409301 other downstream 1007324 4639016 ~ 4648000 (+) True G360276

Expression Profile