RNA id: TU408899


Basic Information

Item Value
RNA id TU408899
length 414
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G359957
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3692923 ~ 3726946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtCAAAttttaaaagagacagtagatctagctggtctgtaataatataatagagacagtagatatagcttgtctgtcatattatagtagagccagtagatatagatggtctgtcatattataatagagacagtatatatagctggtctgtcatattataatagagacagtaaatctagctggtctgtcatattataaaagagacagtagatctagctggtctttcatgttataaaagagacagtagatctagctggtctgtcataatataatagagacagtagatatagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagacatagctattctgtcatattataatagagacagtagatctagctggtctgtcatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408891 lncRNA upstream 61231 3630854 ~ 3631692 (+) True G359951
TU408890 lncRNA upstream 67149 3624889 ~ 3625774 (+) True G359950
TU408889 lncRNA upstream 73236 3619393 ~ 3619687 (+) True G359949
TU408881 lncRNA upstream 77608 3614890 ~ 3615315 (+) True G359943
TU408879 lncRNA upstream 78317 3612391 ~ 3614606 (+) True G359941
TU408947 lncRNA downstream 7798 3711896 ~ 3717842 (+) True G359980
TU408993 lncRNA downstream 27137 3731235 ~ 3731437 (+) True G360024
TU408994 lncRNA downstream 27712 3731810 ~ 3732269 (+) True G360025
TU409000 lncRNA downstream 44229 3748327 ~ 3748713 (+) True G360031
TU409004 lncRNA downstream 55397 3759495 ~ 3759772 (+) True G360035
XM_036976532.1 mRNA upstream 57808 3547948 ~ 3635115 (+) True grin3a
XM_036976617.1 mRNA upstream 363657 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA upstream 363657 3261540 ~ 3329266 (+) True musk
XM_036976613.1 mRNA upstream 544333 3140418 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976627.1 mRNA downstream 857252 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 857252 4561350 ~ 4598573 (+) False LOC110523122
XM_036976624.1 mRNA downstream 857253 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA downstream 857254 4561352 ~ 4598776 (+) True LOC110523122
XM_036976633.1 mRNA downstream 950048 4654146 ~ 4670585 (+) True LOC110523121
TU408266 other upstream 313604 3347509 ~ 3379319 (+) True G359438
TU408189 other upstream 455618 3229594 ~ 3237305 (+) True G359371
TU408188 other upstream 461308 3225057 ~ 3231615 (+) True G359370
TU408187 other upstream 463393 3225057 ~ 3229530 (+) False G359370
TU408186 other upstream 475394 3216944 ~ 3217529 (+) True G359369
TU409106 other downstream 304650 4008748 ~ 4011356 (+) True G360121
TU409255 other downstream 639984 4344082 ~ 4345517 (+) True G360234
TU409284 other downstream 715643 4419741 ~ 4420069 (+) True G360261
TU409312 other downstream 842937 4547035 ~ 4547856 (+) True G360287
TU409301 other downstream 934918 4639016 ~ 4648000 (+) True G360276

Expression Profile