RNA id: TU408914


Basic Information

Item Value
RNA id TU408914
length 1804
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G359957
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3692923 ~ 3726946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagctggtctgtcattttataatagagacagtagatctaactggtctgtcataatataatagagacagtagatctagctggtctttcatgttataaaagagacagtagatctagctggtctgtaataatataatagagacagtagatataggtggtctgtcatattataatagagacagtagatctagatggcctgtcatattataatagagacagtagatctagctagtctgtcatattataatagagacagtagttctagctggtctgtcataatataatagagactgtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtaataatatgatagagacagtagatctagctggtctgtcctaatataatagagacagtagatctagctggtctgtcataatataatagagaccgtagatatagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagacatagctattctgtcatattataatagagacagtagatctagctggtctgtcatattataaaagagacagtagatctagctggtctgtcataatataatagagacagtagatcagctggtctgtcatactataatagagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggacagTCATATTATAAaatagagaatagatctagctggtctgtcataatataatagagacagtagatatagctggtctatcatattataatagagacagtagatctagctggtctgtcatattataaaagagaaaatagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatattatagagacagtagatatagctggtctgtcatattataatagagacagcagatctagctggtctgtcattttataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctttcattttataatagagacagtagatctagctgatctttcatattataatagcgacagtaaatatagctggtctgtcatattataaaagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtaataatgtaatagagacagtagatatagctggtctgtcatattataatagagacagtagatctagctggacagTCATATTATAAaatagacaatagatctagctggtctgtcataatataatagagacagtagatctagctggtctatcatattataatagagacagtagatctagctggtctgtcatattataaaagagacagtatatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatatagctggtctgtctaattttaaaagagacagtagatctagctggtctgtaataatataatagagacagtagatatagcttgtctgtgatattatagtagagacagtagatatagatggtctgtcatattataatagagacagtagatatagctggtctgtaataatataatagagacagtagatatagcttgtttgtcaaattataatagagacagtagacctagctggtctgtcataatataatagcgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408903 lncRNA upstream 3298 3693520 ~ 3698935 (+) False G359957
TU408891 lncRNA upstream 70541 3630854 ~ 3631692 (+) True G359951
TU408890 lncRNA upstream 76459 3624889 ~ 3625774 (+) True G359950
TU408889 lncRNA upstream 82546 3619393 ~ 3619687 (+) True G359949
TU408881 lncRNA upstream 86918 3614890 ~ 3615315 (+) True G359943
TU408947 lncRNA downstream 5493 3711896 ~ 3717842 (+) True G359980
TU408993 lncRNA downstream 24832 3731235 ~ 3731437 (+) True G360024
TU408994 lncRNA downstream 25407 3731810 ~ 3732269 (+) True G360025
TU409000 lncRNA downstream 41924 3748327 ~ 3748713 (+) True G360031
TU409004 lncRNA downstream 53092 3759495 ~ 3759772 (+) True G360035
XM_036976532.1 mRNA upstream 67118 3547948 ~ 3635115 (+) True grin3a
XM_036976617.1 mRNA upstream 372967 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA upstream 372967 3261540 ~ 3329266 (+) True musk
XM_021601519.2 mRNA upstream 553643 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976627.1 mRNA downstream 854947 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 854947 4561350 ~ 4598573 (+) False LOC110523122
XM_036976624.1 mRNA downstream 854948 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA downstream 854949 4561352 ~ 4598776 (+) True LOC110523122
XM_036976633.1 mRNA downstream 947743 4654146 ~ 4670585 (+) True LOC110523121
TU408266 other upstream 322914 3347509 ~ 3379319 (+) True G359438
TU408189 other upstream 464928 3229594 ~ 3237305 (+) True G359371
TU408188 other upstream 470618 3225057 ~ 3231615 (+) True G359370
TU408187 other upstream 472703 3225057 ~ 3229530 (+) False G359370
TU408186 other upstream 484704 3216944 ~ 3217529 (+) True G359369
TU409106 other downstream 302345 4008748 ~ 4011356 (+) True G360121
TU409255 other downstream 637679 4344082 ~ 4345517 (+) True G360234
TU409284 other downstream 713338 4419741 ~ 4420069 (+) True G360261
TU409312 other downstream 840632 4547035 ~ 4547856 (+) True G360287
TU409301 other downstream 932613 4639016 ~ 4648000 (+) True G360276

Expression Profile