RNA id: TU408947


Basic Information

Item Value
RNA id TU408947
length 335
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G359980
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3711896 ~ 3717842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccagaaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacaatgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaacaccctgtacatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatataaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408906 lncRNA upstream 837 3693520 ~ 3711059 (+) False G359957
TU408907 lncRNA upstream 4005 3692923 ~ 3707891 (+) False G359957
TU408911 lncRNA upstream 4005 3692923 ~ 3707891 (+) False G359957
TU408901 lncRNA upstream 4005 3693520 ~ 3707891 (+) False G359957
TU408904 lncRNA upstream 4005 3700044 ~ 3707891 (+) False G359957
TU408993 lncRNA downstream 13393 3731235 ~ 3731437 (+) True G360024
TU408994 lncRNA downstream 13968 3731810 ~ 3732269 (+) True G360025
TU409000 lncRNA downstream 30485 3748327 ~ 3748713 (+) True G360031
TU409004 lncRNA downstream 41653 3759495 ~ 3759772 (+) True G360035
TU409006 lncRNA downstream 44102 3761944 ~ 3762218 (+) True G360037
XM_036976532.1 mRNA upstream 76781 3547948 ~ 3635115 (+) True grin3a
XM_036976617.1 mRNA upstream 382630 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA upstream 382630 3261540 ~ 3329266 (+) True musk
XM_021601519.2 mRNA upstream 563306 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976627.1 mRNA downstream 843508 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 843508 4561350 ~ 4598573 (+) False LOC110523122
XM_036976624.1 mRNA downstream 843509 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA downstream 843510 4561352 ~ 4598776 (+) True LOC110523122
XM_036976633.1 mRNA downstream 936304 4654146 ~ 4670585 (+) True LOC110523121
TU408266 other upstream 332577 3347509 ~ 3379319 (+) True G359438
TU408189 other upstream 474591 3229594 ~ 3237305 (+) True G359371
TU408188 other upstream 480281 3225057 ~ 3231615 (+) True G359370
TU408187 other upstream 482366 3225057 ~ 3229530 (+) False G359370
TU408186 other upstream 494367 3216944 ~ 3217529 (+) True G359369
TU409106 other downstream 290906 4008748 ~ 4011356 (+) True G360121
TU409255 other downstream 626240 4344082 ~ 4345517 (+) True G360234
TU409284 other downstream 701899 4419741 ~ 4420069 (+) True G360261
TU409312 other downstream 829193 4547035 ~ 4547856 (+) True G360287
TU409301 other downstream 921174 4639016 ~ 4648000 (+) True G360276

Expression Profile