RNA id: TU409064


Basic Information

Item Value
RNA id TU409064
length 202
lncRNA type intronic
GC content 0.44
exon number 2
gene id G360086
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3894875 ~ 3895142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCTGGTGCAGCGCAACATTATAAACTAAAGCACTGATCAGTGGGAACAGAGATCAGAGTGACCGCTAAAGGTGGACAACAACATTATAAACTAAAGCACTGATCAGTGGGAACAGAGATCAGAGTGACCGCTAAAGGTGGACAACAACATTATAAACTAAAGCACTGATCAGTGGGAACAGAGATCAGAGTGACCGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409060 lncRNA upstream 4831 3889620 ~ 3890044 (+) True G360083
TU409007 lncRNA upstream 132210 3762455 ~ 3762665 (+) True G360038
TU409006 lncRNA upstream 132657 3761944 ~ 3762218 (+) True G360037
TU409004 lncRNA upstream 135103 3759495 ~ 3759772 (+) True G360035
TU409000 lncRNA upstream 146162 3748327 ~ 3748713 (+) True G360031
TU409088 lncRNA downstream 76337 3971479 ~ 3971863 (+) True G360107
TU409097 lncRNA downstream 92985 3988127 ~ 4039165 (+) True G360114
TU409123 lncRNA downstream 158905 4054047 ~ 4054310 (+) True G360134
TU409139 lncRNA downstream 166490 4061632 ~ 4061975 (+) True G360137
TU409149 lncRNA downstream 211424 4106566 ~ 4106820 (+) True G360147
XM_036976532.1 mRNA upstream 259760 3547948 ~ 3635115 (+) True grin3a
XM_036976617.1 mRNA upstream 565609 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA upstream 565609 3261540 ~ 3329266 (+) True musk
XM_021601519.2 mRNA upstream 746285 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976627.1 mRNA downstream 666208 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 666208 4561350 ~ 4598573 (+) False LOC110523122
XM_036976624.1 mRNA downstream 666209 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA downstream 666210 4561352 ~ 4598776 (+) True LOC110523122
XM_036976633.1 mRNA downstream 759004 4654146 ~ 4670585 (+) True LOC110523121
TU408266 other upstream 515556 3347509 ~ 3379319 (+) True G359438
TU408189 other upstream 657570 3229594 ~ 3237305 (+) True G359371
TU408188 other upstream 663260 3225057 ~ 3231615 (+) True G359370
TU408187 other upstream 665345 3225057 ~ 3229530 (+) False G359370
TU408186 other upstream 677346 3216944 ~ 3217529 (+) True G359369
TU409106 other downstream 113606 4008748 ~ 4011356 (+) True G360121
TU409255 other downstream 448940 4344082 ~ 4345517 (+) True G360234
TU409284 other downstream 524599 4419741 ~ 4420069 (+) True G360261
TU409312 other downstream 651893 4547035 ~ 4547856 (+) True G360287
TU409301 other downstream 743874 4639016 ~ 4648000 (+) True G360276

Expression Profile