RNA id: TU409088


Basic Information

Item Value
RNA id TU409088
length 327
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G360107
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3971479 ~ 3971863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCTTTGTGTCTTTACCGTCAAGGTCGTTCTCTGGCGTCTCGGCGGTGAACCACTCGCTGGCCGGGCCCGTGCCGTTAGCTGTCATGGCAGAGACCTGGAAACTGTACTGACTGCCTTTTTCCagccctgagaggagagaggatgttgTGACAGACACATCTGTACTGACTGATTTTCTACAGCCCTGAGACAGAGACGCACAACAACGTCAGAAAGATATTTTTAAAGAAACACGACGACACATAGATGTTAATGAAAACAGTACTTTACACAAACCTGAGTCTGTAAACACGGGGTGGTAAACACGACAACATCACAGAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409064 lncRNA upstream 76337 3894875 ~ 3895142 (+) False G360086
TU409065 lncRNA upstream 76337 3894875 ~ 3895142 (+) True G360086
TU409060 lncRNA upstream 81435 3889620 ~ 3890044 (+) True G360083
TU409007 lncRNA upstream 208814 3762455 ~ 3762665 (+) True G360038
TU409006 lncRNA upstream 209261 3761944 ~ 3762218 (+) True G360037
TU409097 lncRNA downstream 16264 3988127 ~ 4039165 (+) True G360114
TU409123 lncRNA downstream 82184 4054047 ~ 4054310 (+) True G360134
TU409139 lncRNA downstream 89769 4061632 ~ 4061975 (+) True G360137
TU409149 lncRNA downstream 134703 4106566 ~ 4106820 (+) True G360147
TU409151 lncRNA downstream 141681 4113544 ~ 4113764 (+) True G360149
XM_036976532.1 mRNA upstream 336364 3547948 ~ 3635115 (+) True grin3a
XM_036976617.1 mRNA upstream 642213 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA upstream 642213 3261540 ~ 3329266 (+) True musk
XM_021601519.2 mRNA upstream 822889 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976627.1 mRNA downstream 589487 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 589487 4561350 ~ 4598573 (+) False LOC110523122
XM_036976624.1 mRNA downstream 589488 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA downstream 589489 4561352 ~ 4598776 (+) True LOC110523122
XM_036976633.1 mRNA downstream 682283 4654146 ~ 4670585 (+) True LOC110523121
TU408266 other upstream 592160 3347509 ~ 3379319 (+) True G359438
TU408189 other upstream 734174 3229594 ~ 3237305 (+) True G359371
TU408188 other upstream 739864 3225057 ~ 3231615 (+) True G359370
TU408187 other upstream 741949 3225057 ~ 3229530 (+) False G359370
TU408186 other upstream 753950 3216944 ~ 3217529 (+) True G359369
TU409106 other downstream 36885 4008748 ~ 4011356 (+) True G360121
TU409255 other downstream 372219 4344082 ~ 4345517 (+) True G360234
TU409284 other downstream 447878 4419741 ~ 4420069 (+) True G360261
TU409312 other downstream 575172 4547035 ~ 4547856 (+) True G360287
TU409301 other downstream 667153 4639016 ~ 4648000 (+) True G360276

Expression Profile