RNA id: TU409097


Basic Information

Item Value
RNA id TU409097
length 245
lncRNA type antisense_over
GC content 0.50
exon number 4
gene id G360114
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3988127 ~ 4039165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagagagagagagagagagagagagagagagagagagatagagataaagagagagatagagagagagagagagagagagagagagagagagagaaaaagaaagaaagagagagagagagagggggagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagggggggagagagagagagagagagaggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409088 lncRNA upstream 16264 3971479 ~ 3971863 (+) True G360107
TU409064 lncRNA upstream 92985 3894875 ~ 3895142 (+) False G360086
TU409065 lncRNA upstream 92985 3894875 ~ 3895142 (+) True G360086
TU409060 lncRNA upstream 98083 3889620 ~ 3890044 (+) True G360083
TU409007 lncRNA upstream 225462 3762455 ~ 3762665 (+) True G360038
TU409123 lncRNA downstream 14882 4054047 ~ 4054310 (+) True G360134
TU409139 lncRNA downstream 22467 4061632 ~ 4061975 (+) True G360137
TU409149 lncRNA downstream 67401 4106566 ~ 4106820 (+) True G360147
TU409151 lncRNA downstream 74379 4113544 ~ 4113764 (+) True G360149
TU409175 lncRNA downstream 129198 4168363 ~ 4168637 (+) True G360173
XM_036976532.1 mRNA upstream 353012 3547948 ~ 3635115 (+) True grin3a
XM_036976617.1 mRNA upstream 658861 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA upstream 658861 3261540 ~ 3329266 (+) True musk
XM_021601519.2 mRNA upstream 839537 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976627.1 mRNA downstream 522185 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 522185 4561350 ~ 4598573 (+) False LOC110523122
XM_036976624.1 mRNA downstream 522186 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA downstream 522187 4561352 ~ 4598776 (+) True LOC110523122
XM_036976633.1 mRNA downstream 614981 4654146 ~ 4670585 (+) True LOC110523121
TU408266 other upstream 608808 3347509 ~ 3379319 (+) True G359438
TU408189 other upstream 750822 3229594 ~ 3237305 (+) True G359371
TU408188 other upstream 756512 3225057 ~ 3231615 (+) True G359370
TU408187 other upstream 758597 3225057 ~ 3229530 (+) False G359370
TU408186 other upstream 770598 3216944 ~ 3217529 (+) True G359369
TU409255 other downstream 304917 4344082 ~ 4345517 (+) True G360234
TU409284 other downstream 380576 4419741 ~ 4420069 (+) True G360261
TU409312 other downstream 507870 4547035 ~ 4547856 (+) True G360287
TU409301 other downstream 599851 4639016 ~ 4648000 (+) True G360276
TU410157 other downstream 1257705 5296870 ~ 5299403 (+) True G360985

Expression Profile