RNA id: TU409237


Basic Information

Item Value
RNA id TU409237
length 255
lncRNA type intronic
GC content 0.45
exon number 2
gene id G360218
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4294874 ~ 4295332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATGACCGTGTCCACTGCACTAATAAATGTAATCCTGTCACTGTGTGTCTGCCACTGGGATTTCCAGAAACATGGTGATGTAATGGGATTAAGTCTCTGATACTGAATGCAGGGTCTAGACCCAACTTCCTACTCAACATGGTTCCTCTCTCTGATACTGACTACAGGGTCTAGACACAACATGGTTCCTCTCTCTGATACTGACTACAGGGTCTAGACACAACATGGTTCCTCTCTCTGATACTGAATACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409225 lncRNA upstream 9590 4280394 ~ 4285284 (+) True G360212
TU409208 lncRNA upstream 40923 4253557 ~ 4253951 (+) True G360197
TU409206 lncRNA upstream 41983 4252493 ~ 4252891 (+) True G360195
TU409201 lncRNA upstream 49051 4244404 ~ 4245823 (+) True G360192
TU409196 lncRNA upstream 72756 4221602 ~ 4222118 (+) True G360187
TU409246 lncRNA downstream 16326 4311658 ~ 4312195 (+) True G360226
TU409256 lncRNA downstream 51267 4346599 ~ 4347050 (+) True G360235
TU409276 lncRNA downstream 101089 4396421 ~ 4396646 (+) True G360253
TU409283 lncRNA downstream 121683 4417015 ~ 4417526 (+) True G360260
TU409286 lncRNA downstream 125529 4420861 ~ 4421107 (+) True G360263
XM_036976532.1 mRNA upstream 659759 3547948 ~ 3635115 (+) True grin3a
XM_036976617.1 mRNA upstream 965608 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA upstream 965608 3261540 ~ 3329266 (+) True musk
XM_021601519.2 mRNA upstream 1146284 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976627.1 mRNA downstream 266018 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 266018 4561350 ~ 4598573 (+) False LOC110523122
XM_036976624.1 mRNA downstream 266019 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA downstream 266020 4561352 ~ 4598776 (+) True LOC110523122
XM_036976633.1 mRNA downstream 358814 4654146 ~ 4670585 (+) True LOC110523121
TU409106 other upstream 283518 4008748 ~ 4011356 (+) True G360121
TU408266 other upstream 915555 3347509 ~ 3379319 (+) True G359438
TU408189 other upstream 1057569 3229594 ~ 3237305 (+) True G359371
TU408188 other upstream 1063259 3225057 ~ 3231615 (+) True G359370
TU408187 other upstream 1065344 3225057 ~ 3229530 (+) False G359370
TU409255 other downstream 48750 4344082 ~ 4345517 (+) True G360234
TU409284 other downstream 124409 4419741 ~ 4420069 (+) True G360261
TU409312 other downstream 251703 4547035 ~ 4547856 (+) True G360287
TU409301 other downstream 343684 4639016 ~ 4648000 (+) True G360276
TU410157 other downstream 1001538 5296870 ~ 5299403 (+) True G360985

Expression Profile