RNA id: TU409255


Basic Information

Item Value
RNA id TU409255
length 1282
RNA type TUCP
GC content 0.45
exon number 3
gene id G360234
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4344082 ~ 4345517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtattcggagcatgtgacaataaaaattggacatgatttttgaTTTGATGTCTCTCTAAATCTCCTTTgatgtaccgtaacaccctgtatatagtctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagtctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccggtacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccggtgcccctgtatatagtctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccataacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctctacattgactctgtaccgtaacaccctgtatatagtctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtagtgtaacaccctgtatattgcctccacattgactctgtagtgtaacaccctgtatattgcctccacaatgaccagagcactattccctctatatagtgaactactttagaccagagccctattccctatatagtacactactttagtccagggccctattccctatatagtacactactttagaccagagccctattccctctatatagtacactagtttagaccagggccctattccctctatatagtgcactactttagaccagagcccgattccctctatatagtgcactactttagaccagggccctattccctctatatagtgcactactttagaccagggccctattccctctatatagtgcactactttagaccagggccctattccctatatatggtacactactttagaccagggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409246 lncRNA upstream 31887 4311658 ~ 4312195 (+) True G360226
TU409237 lncRNA upstream 48750 4294874 ~ 4295332 (+) True G360218
TU409225 lncRNA upstream 58798 4280394 ~ 4285284 (+) True G360212
TU409208 lncRNA upstream 90131 4253557 ~ 4253951 (+) True G360197
TU409206 lncRNA upstream 91191 4252493 ~ 4252891 (+) True G360195
TU409256 lncRNA downstream 1082 4346599 ~ 4347050 (+) True G360235
TU409276 lncRNA downstream 50904 4396421 ~ 4396646 (+) True G360253
TU409283 lncRNA downstream 71498 4417015 ~ 4417526 (+) True G360260
TU409286 lncRNA downstream 75344 4420861 ~ 4421107 (+) True G360263
TU409294 lncRNA downstream 92574 4438091 ~ 4438602 (+) True G360271
XM_036976532.1 mRNA upstream 708967 3547948 ~ 3635115 (+) True grin3a
XM_036976617.1 mRNA upstream 1014816 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA upstream 1014816 3261540 ~ 3329266 (+) True musk
XM_021601519.2 mRNA upstream 1195492 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976627.1 mRNA downstream 215833 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 215833 4561350 ~ 4598573 (+) False LOC110523122
XM_036976624.1 mRNA downstream 215834 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA downstream 215835 4561352 ~ 4598776 (+) True LOC110523122
XM_036976633.1 mRNA downstream 308629 4654146 ~ 4670585 (+) True LOC110523121
TU409106 other upstream 332726 4008748 ~ 4011356 (+) True G360121
TU408266 other upstream 964763 3347509 ~ 3379319 (+) True G359438
TU408189 other upstream 1106777 3229594 ~ 3237305 (+) True G359371
TU408188 other upstream 1112467 3225057 ~ 3231615 (+) True G359370
TU408187 other upstream 1114552 3225057 ~ 3229530 (+) False G359370
TU409284 other downstream 74224 4419741 ~ 4420069 (+) True G360261
TU409312 other downstream 201518 4547035 ~ 4547856 (+) True G360287
TU409301 other downstream 293499 4639016 ~ 4648000 (+) True G360276
TU410157 other downstream 951353 5296870 ~ 5299403 (+) True G360985
TU411026 other downstream 1458311 5803828 ~ 5927926 (+) False G361671

Expression Profile