RNA id: TU409283


Basic Information

Item Value
RNA id TU409283
length 512
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G360260
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4417015 ~ 4417526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCATATGATGGTGAATCACCGGTGAGATAGCATAACCAGACAAATACCGAAAGTCTTTTCACCCAAAAACATCCAAATGATCCCTCCATGATTCCGATTCACCGCTGAGCGACACTGGTCCCACTATCACAAAAATCCTTTTCTAAAAACCACACAACCCACGAATCAATTCATGAGCGCAGTGCGTATGGAACCGGTTGCACAATGAATCTCCCAATACAATAGCAACAAAAAGCAGTCAGGTACGTCGGTGGTAGTTTCCAAGTTATGAAGAAACAACTAAAACCGTTTAGTTATTCATCTTTTTTTCAGCGGCAGTGCTCCAAGCGTAGCGCGGTAGAAACCCCCCTTGGGAAAGGACATGCGGGCTTCGGATCACCAGTAACGGGAGCTGTCCAGCGGTTCACTGTGAGAGACcagcgtgagagagaggagatgggtgcGCGAATTAATTGATCTAACTGGGGGTTGGAGGTAAAGAGCGGAGTGATATTAACTCCGCTGAACCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409276 lncRNA upstream 20369 4396421 ~ 4396646 (+) True G360253
TU409256 lncRNA upstream 69965 4346599 ~ 4347050 (+) True G360235
TU409246 lncRNA upstream 104820 4311658 ~ 4312195 (+) True G360226
TU409237 lncRNA upstream 121683 4294874 ~ 4295332 (+) True G360218
TU409225 lncRNA upstream 131731 4280394 ~ 4285284 (+) True G360212
TU409286 lncRNA downstream 3335 4420861 ~ 4421107 (+) True G360263
TU409294 lncRNA downstream 20565 4438091 ~ 4438602 (+) True G360271
TU409329 lncRNA downstream 38814 4456340 ~ 4457908 (+) True G360304
TU409331 lncRNA downstream 41159 4458685 ~ 4459780 (+) True G360306
TU409332 lncRNA downstream 46955 4464481 ~ 4481184 (+) True G360307
XM_036976532.1 mRNA upstream 781900 3547948 ~ 3635115 (+) True grin3a
XM_036976617.1 mRNA upstream 1087749 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA upstream 1087749 3261540 ~ 3329266 (+) True musk
XM_021601519.2 mRNA upstream 1268425 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976627.1 mRNA downstream 143824 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 143824 4561350 ~ 4598573 (+) False LOC110523122
XM_036976624.1 mRNA downstream 143825 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA downstream 143826 4561352 ~ 4598776 (+) True LOC110523122
XM_036976633.1 mRNA downstream 236620 4654146 ~ 4670585 (+) True LOC110523121
TU409255 other upstream 71498 4344082 ~ 4345517 (+) True G360234
TU409106 other upstream 405659 4008748 ~ 4011356 (+) True G360121
TU408266 other upstream 1037696 3347509 ~ 3379319 (+) True G359438
TU408189 other upstream 1179710 3229594 ~ 3237305 (+) True G359371
TU408188 other upstream 1185400 3225057 ~ 3231615 (+) True G359370
TU409284 other downstream 2215 4419741 ~ 4420069 (+) True G360261
TU409312 other downstream 129509 4547035 ~ 4547856 (+) True G360287
TU409301 other downstream 221490 4639016 ~ 4648000 (+) True G360276
TU410157 other downstream 879344 5296870 ~ 5299403 (+) True G360985
TU411026 other downstream 1386302 5803828 ~ 5927926 (+) False G361671

Expression Profile