RNA id: TCONS_00031290


Basic Information

Item Value
RNA id TCONS_00031290
length 910
lncRNA type retained_intron
GC content 0.38
exon number 2
gene id XLOC_015708
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36646451 ~ 36659156 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGGAAACATCTCTGCCTCTGGAACTCCAGATAATGGCTGACGCTCCACAGAATGACTCTGAATGTCCCTCATCTGGCCAGACCGAAGCTTCAGCTGGAGGTCTGAGTTTGCTGGAGAGCTCGACGCAGGAGAACCAAGAAGATGGCCAGGTTTTGTTTGAGGATTCTGTGTTTGCTGGTTGTTTGCAGGATGGACTGCACAGTCTGTGTCTGGAGGACAGCTTGACAGATGTGATTCTCAATGTACAGAGTCAGAGCTTCAAGTGCCATCGAGTGGTCCTCGCTGCAGCCAGTCATTATTTCAGAGCAATGTTTTGTAATGACCTAAGAGAAAAGCATGaagaaaatgttaatattaaaggCATTGATGCTGACACTATGAGAATCCTGTTAGATTACACTTACACCAGCAAAGTCACCATCACCAAAGACAATGTTCAGAGAATGCTTGAGGCCGCCTGCCTTTTTCAGGTTTGTATTGTTGTACAGGTTTTGCACACCTTCATGTTTAAGTAATTCCCATCTGAACCATATTATCATTTTAATGGCATTAACAGTATGTATAGCATGATGGAATAGTCAACACATATAATCTGACtaaaatttctgtttgtttgccagccgttatttaaatttgtattttatgttttgtacaTTAAAACCACTAGGAAAGTACCAAGCACAACAGGGAAGTGAAAATTAGCATTGTTTACAAAAAGATATACACATTTTTCCAATTGACTCTCCTTAGTCACATCTGGGTAACTGACTGGGGTGAAATGTTTACTAAAAAAGTTGAGGTgacttatgtttatatttttatgaaCATAATTGCAATGAAATGTCTGTCAAATCATGTTCAAATATGAATTtagtaagtttttattttaaaacaaagccctttaaaaa

Function

GO:

id name namespace
GO:0002467 germinal center formation biological_process
GO:0050853 B cell receptor signaling pathway biological_process

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030616-325 Predicted to act upstream of or within B cell receptor signaling pathway and germinal center formation. Orthologous to human KLHL6 (kelch like family member 6).

Ensembl:

ensembl_id ENSDART00000122748

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033612 lncRNA upstream 3737 36638931 ~ 36642762 (+) True XLOC_015707
TCONS_00033609 lncRNA upstream 63224 36180243 ~ 36583275 (+) False XLOC_015702
TCONS_00033282 lncRNA downstream 94792 36742343 ~ 36743912 (+) True XLOC_015712
TCONS_00031301 lncRNA downstream 292391 36939942 ~ 36941479 (+) True XLOC_015717
TCONS_00031310 lncRNA downstream 529299 37176850 ~ 37182269 (+) False XLOC_015720
TCONS_00031311 lncRNA downstream 529332 37176883 ~ 37182269 (+) False XLOC_015720
TCONS_00031320 lncRNA downstream 597886 37245437 ~ 37258241 (+) True XLOC_015723
TCONS_00031287 mRNA upstream 9633 36616830 ~ 36636866 (+) False XLOC_015706
TCONS_00031286 mRNA upstream 9748 36616830 ~ 36636751 (+) False XLOC_015706
TCONS_00031288 mRNA upstream 10640 36620011 ~ 36635859 (+) True XLOC_015706
TCONS_00031285 mRNA upstream 10641 36608387 ~ 36635858 (+) False XLOC_015706
TCONS_00031284 mRNA upstream 37737 36606019 ~ 36608762 (+) False XLOC_015706
TCONS_00031291 mRNA downstream 44220 36691771 ~ 36695144 (+) True XLOC_015709
TCONS_00031292 mRNA downstream 53771 36701322 ~ 36721289 (+) True XLOC_015710
TCONS_00031293 mRNA downstream 73806 36721357 ~ 36731963 (+) True XLOC_015711
TCONS_00031295 mRNA downstream 180692 36828243 ~ 36854500 (+) False XLOC_015714
TCONS_00031296 mRNA downstream 180707 36828258 ~ 36831491 (+) False XLOC_015714
TCONS_00031283 other upstream 521682 36124755 ~ 36124817 (+) True XLOC_015701
TCONS_00031282 other upstream 522217 36124223 ~ 36124282 (+) True XLOC_015700
TCONS_00031281 other upstream 522568 36123871 ~ 36123931 (+) True XLOC_015699
TCONS_00031280 other upstream 523384 36123056 ~ 36123115 (+) True XLOC_015698
TCONS_00031279 other upstream 523835 36122605 ~ 36122664 (+) True XLOC_015697
TCONS_00031294 other downstream 106098 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031307 other downstream 492923 37140474 ~ 37143617 (+) True XLOC_015719
TCONS_00031312 other downstream 544890 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031331 other downstream 1189068 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031335 other downstream 1227220 37874771 ~ 37878304 (+) False XLOC_015735