Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031291 |
| length | 1163 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 2 |
| gene id | XLOC_015709 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 36691771 ~ 36695144 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045087 | innate immune response | biological_process |
| GO:0005615 | extracellular space | cellular_component |
| GO:0001849 | complement component C1q complex binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-081104-385 | Predicted to enable complement component C1q complex binding activity. Predicted to be involved in innate immune response. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in cystic fibrosis and invasive aspergillosis. Orthologous to human PTX3 (pentraxin 3). |
| ensembl_id | ENSDART00000131978 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00031290 | lncRNA | upstream | 44220 | 36646499 ~ 36647551 (+) | True | XLOC_015708 |
| TCONS_00033612 | lncRNA | upstream | 49009 | 36638931 ~ 36642762 (+) | True | XLOC_015707 |
| TCONS_00033611 | lncRNA | upstream | 108496 | 36521895 ~ 36583275 (+) | True | XLOC_015702 |
| TCONS_00033281 | lncRNA | upstream | 127298 | 36552692 ~ 36564473 (+) | True | XLOC_015705 |
| TCONS_00033280 | lncRNA | upstream | 220661 | 36424854 ~ 36471110 (+) | True | XLOC_015704 |
| TCONS_00033282 | lncRNA | downstream | 47199 | 36742343 ~ 36743912 (+) | True | XLOC_015712 |
| TCONS_00031301 | lncRNA | downstream | 244798 | 36939942 ~ 36941479 (+) | True | XLOC_015717 |
| TCONS_00031310 | lncRNA | downstream | 481706 | 37176850 ~ 37182269 (+) | False | XLOC_015720 |
| TCONS_00031311 | lncRNA | downstream | 481739 | 37176883 ~ 37182269 (+) | False | XLOC_015720 |
| TCONS_00031320 | lncRNA | downstream | 550293 | 37245437 ~ 37258241 (+) | True | XLOC_015723 |
| TCONS_00031289 | mRNA | upstream | 32615 | 36646451 ~ 36659156 (+) | False | XLOC_015708 |
| TCONS_00031287 | mRNA | upstream | 54905 | 36616830 ~ 36636866 (+) | False | XLOC_015706 |
| TCONS_00031286 | mRNA | upstream | 55020 | 36616830 ~ 36636751 (+) | False | XLOC_015706 |
| TCONS_00031288 | mRNA | upstream | 55912 | 36620011 ~ 36635859 (+) | True | XLOC_015706 |
| TCONS_00031285 | mRNA | upstream | 55913 | 36608387 ~ 36635858 (+) | False | XLOC_015706 |
| TCONS_00031292 | mRNA | downstream | 6178 | 36701322 ~ 36721289 (+) | True | XLOC_015710 |
| TCONS_00031293 | mRNA | downstream | 26213 | 36721357 ~ 36731963 (+) | True | XLOC_015711 |
| TCONS_00031295 | mRNA | downstream | 133099 | 36828243 ~ 36854500 (+) | False | XLOC_015714 |
| TCONS_00031296 | mRNA | downstream | 133114 | 36828258 ~ 36831491 (+) | False | XLOC_015714 |
| TCONS_00031297 | mRNA | downstream | 133602 | 36828746 ~ 36853834 (+) | True | XLOC_015714 |
| TCONS_00031283 | other | upstream | 566954 | 36124755 ~ 36124817 (+) | True | XLOC_015701 |
| TCONS_00031282 | other | upstream | 567489 | 36124223 ~ 36124282 (+) | True | XLOC_015700 |
| TCONS_00031281 | other | upstream | 567840 | 36123871 ~ 36123931 (+) | True | XLOC_015699 |
| TCONS_00031280 | other | upstream | 568656 | 36123056 ~ 36123115 (+) | True | XLOC_015698 |
| TCONS_00031279 | other | upstream | 569107 | 36122605 ~ 36122664 (+) | True | XLOC_015697 |
| TCONS_00031294 | other | downstream | 58505 | 36753649 ~ 36753758 (+) | True | XLOC_015713 |
| TCONS_00031307 | other | downstream | 445330 | 37140474 ~ 37143617 (+) | True | XLOC_015719 |
| TCONS_00031312 | other | downstream | 497297 | 37192441 ~ 37201587 (+) | True | XLOC_015720 |
| TCONS_00031331 | other | downstream | 1141475 | 37836619 ~ 37836920 (+) | False | XLOC_015734 |
| TCONS_00031335 | other | downstream | 1179627 | 37874771 ~ 37878304 (+) | False | XLOC_015735 |
