RNA id: TU409800


Basic Information

Item Value
RNA id TU409800
length 246
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G360694
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4729597 ~ 4729842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATATACATTTGTTGTCTCTCTACTGCACCGTTCGCAAAACCCACACAAACTCAACTCAGACGCTGTATTCACAGTGACCATACAGAAACTCAGAGTTGAACTAATAATGACACACAGATTTAACACTGTACTTTTCATTGACCCCAAGACACTGTTAAGTTGGGTCTgcagtatctatgtaaagtgtTCTTCCTCATCCGTCTGTGTTTCTACTGCTTGTGTATTGATTCATGTAAATAATATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409781 lncRNA upstream 8772 4720614 ~ 4720825 (+) True G360681
TU409780 lncRNA upstream 9112 4720048 ~ 4720485 (+) True G360680
TU409773 lncRNA upstream 12840 4716106 ~ 4716757 (+) True G360673
TU409325 lncRNA upstream 62111 4643394 ~ 4667486 (+) True G360300
TU409359 lncRNA upstream 68110 4661064 ~ 4661487 (+) True G360333
TU409802 lncRNA downstream 3092 4732934 ~ 4733148 (+) True G360696
TU409803 lncRNA downstream 3514 4733356 ~ 4734075 (+) True G360697
TU409807 lncRNA downstream 4950 4734792 ~ 4735013 (+) True G360699
TU409815 lncRNA downstream 17149 4746991 ~ 4747469 (+) True G360707
TU409826 lncRNA downstream 31792 4761634 ~ 4761907 (+) True G360718
XM_036976633.1 mRNA upstream 59012 4654146 ~ 4670585 (+) True LOC110523121
XM_036976624.1 mRNA upstream 130821 4561351 ~ 4598776 (+) False LOC110523122
XM_036976623.1 mRNA upstream 130821 4561352 ~ 4598776 (+) True LOC110523122
XM_036976626.1 mRNA upstream 131024 4561350 ~ 4598573 (+) False LOC110523122
XM_036976627.1 mRNA upstream 162567 4561350 ~ 4567030 (+) False LOC110523122
XM_036976636.1 mRNA downstream 178617 4908459 ~ 5339339 (+) False tcf4
XM_036976640.1 mRNA downstream 179923 4909765 ~ 5339339 (+) False tcf4
XM_036976641.1 mRNA downstream 179923 4909765 ~ 5339339 (+) False tcf4
XM_036976637.1 mRNA downstream 179924 4909766 ~ 5339339 (+) False tcf4
XM_036976638.1 mRNA downstream 179924 4909766 ~ 5339339 (+) False tcf4
TU409301 other upstream 81597 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 181741 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 309528 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 384080 4344082 ~ 4345517 (+) True G360234
TU409106 other upstream 718241 4008748 ~ 4011356 (+) True G360121
TU410157 other downstream 567028 5296870 ~ 5299403 (+) True G360985
TU411026 other downstream 1073986 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 1073986 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 2456084 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 2456188 7186030 ~ 7189819 (+) True G362297

Expression Profile