RNA id: TU409858



Basic Information


Item Value
RNA id TU409858
length 224
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G360749
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4816662 ~ 4816885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACATAGCACATAGCACATAGCACATAGCAACATAGCACATAGCACATAGCACATAGCAACATAGCACATAGCAAATAGCACATAGCACATAGCAACATAGCACATAGCAACATAGCACATAGCAACATAGCACATAGCAACATAGCACATAGCACATAGCACATAGCAACATAGCACATAGCACATAGCACATAGCACATAGCAACATAGCACATAGCAACATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU409853 lncRNA downstream 5303 4810908 ~ 4811359 (-) True G360744
TU409851 lncRNA downstream 5832 4810628 ~ 4810830 (-) True G360742
TU409838 lncRNA downstream 39760 4776223 ~ 4776902 (-) True G360729
TU409829 lncRNA downstream 52939 4763499 ~ 4763723 (-) True G360721
TU409827 lncRNA downstream 53609 4762850 ~ 4763053 (-) True G360719
TU409866 lncRNA upstream 6122 4823007 ~ 4823405 (-) True G360757
TU410194 lncRNA upstream 25177 4842062 ~ 4842405 (-) True G361018
TU410225 lncRNA upstream 62894 4879779 ~ 4880986 (-) True G361048
TU410277 lncRNA upstream 141022 4957907 ~ 4958535 (-) False G361098
TU410278 lncRNA upstream 141022 4957907 ~ 4958535 (-) True G361098
XM_021601530.2 mRNA downstream 168710 4639020 ~ 4647952 (-) True nars1
XR_005051626.1 mRNA downstream 178560 4623977 ~ 4638102 (-) False fech
XM_036976654.1 mRNA upstream 654144 5471029 ~ 5510664 (-) False LOC110524935
XM_036976653.1 mRNA upstream 654144 5471029 ~ 5564365 (-) True LOC110524935
XM_021601535.2 mRNA upstream 1128279 5945164 ~ 5954687 (-) False LOC110523123
XM_036976659.1 mRNA upstream 1277084 6093969 ~ 6420502 (-) False LOC110523124
XM_036976660.1 mRNA upstream 1277084 6093969 ~ 6420556 (-) False LOC110523124
TU409811 other downstream 76960 4738312 ~ 4739702 (-) True G360703
TU409699 other downstream 265735 4550346 ~ 4550927 (-) True G360610
TU409612 other downstream 516637 4299392 ~ 4300025 (-) True G360532
TU409363 other downstream 869741 3886440 ~ 3946921 (-) False LOC110513199
TU409382 other downstream 1067944 3748236 ~ 3748718 (-) True G360345
TU410365 other upstream 263693 5080578 ~ 5081868 (-) False G361170
TU410367 other upstream 263693 5080578 ~ 5081868 (-) False G361170
TU411115 other upstream 1128587 5945472 ~ 5954251 (-) True LOC110523123
TU413187 other upstream 1726790 6543675 ~ 6554715 (-) False G363470
TU413188 other upstream 1726790 6543675 ~ 6551674 (-) True G363470

Expression Profile