RNA id: TU409866


Basic Information

Item Value
RNA id TU409866
length 399
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G360757
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 4823007 ~ 4823405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAACATGGACTAATATAGTAAACACAACATGGACTAATATAGTAAACACAACGTGGACTAAGATAGTAAACACAACATGGACTAATATAGTAAACACAACATGGACTAATATAGTAAACACAACGTGGACTAAGATAGTAAACACAACATGGACTAATATAGTAAACACAACATGGACTAATATAGTAAACACAACGTGGACTAAGATAGTATACACAACATGGACTAATATAGTAAACACAACGTGGACTAATATAGTAAACACAACATGGACTAATATAGTAAACACAACGTGGACTAAGATAGTAAACACAACGTGGACTAAGATAGTAAACACAACGTGGACTAAGATAGTATACACAACATGGACTAAGACAGTATACACAACGTGGACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409858 lncRNA downstream 6122 4816662 ~ 4816885 (-) True G360749
TU409853 lncRNA downstream 11648 4810908 ~ 4811359 (-) True G360744
TU409851 lncRNA downstream 12177 4810628 ~ 4810830 (-) True G360742
TU409838 lncRNA downstream 46105 4776223 ~ 4776902 (-) True G360729
TU409829 lncRNA downstream 59284 4763499 ~ 4763723 (-) True G360721
TU410194 lncRNA upstream 18657 4842062 ~ 4842405 (-) True G361018
TU410225 lncRNA upstream 56374 4879779 ~ 4880986 (-) True G361048
TU410277 lncRNA upstream 134502 4957907 ~ 4958535 (-) False G361098
TU410278 lncRNA upstream 134502 4957907 ~ 4958535 (-) True G361098
TU410283 lncRNA upstream 141523 4964928 ~ 4965331 (-) True G361103
XM_021601530.2 mRNA downstream 175055 4639020 ~ 4647952 (-) True nars1
XR_005051626.1 mRNA downstream 184905 4623977 ~ 4638102 (-) False fech
XM_036976654.1 mRNA upstream 647624 5471029 ~ 5510664 (-) False LOC110524935
XM_036976653.1 mRNA upstream 647624 5471029 ~ 5564365 (-) True LOC110524935
XM_021601535.2 mRNA upstream 1121759 5945164 ~ 5954687 (-) False LOC110523123
XM_036976659.1 mRNA upstream 1270564 6093969 ~ 6420502 (-) False LOC110523124
XM_036976660.1 mRNA upstream 1270564 6093969 ~ 6420556 (-) False LOC110523124
TU409811 other downstream 83305 4738312 ~ 4739702 (-) True G360703
TU409699 other downstream 272080 4550346 ~ 4550927 (-) True G360610
TU409612 other downstream 522982 4299392 ~ 4300025 (-) True G360532
TU409363 other downstream 876086 3886440 ~ 3946921 (-) False LOC110513199
TU409382 other downstream 1074289 3748236 ~ 3748718 (-) True G360345
TU410365 other upstream 257173 5080578 ~ 5081868 (-) False G361170
TU410367 other upstream 257173 5080578 ~ 5081868 (-) False G361170
TU411115 other upstream 1122067 5945472 ~ 5954251 (-) True LOC110523123
TU413187 other upstream 1720270 6543675 ~ 6554715 (-) False G363470
TU413188 other upstream 1720270 6543675 ~ 6551674 (-) True G363470

Expression Profile